Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f15
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 30 2.1
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 4.8
10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957... 28 6.3
08_01_0998 - 10136050-10138356 28 6.3
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 6.3
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529... 28 8.3
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 28 8.3
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 138 EHNPLLHDELSEEDQSIPRHYRRRSFSNRN 227
EH P++HD+ +D +P + S NRN
Sbjct: 73 EHIPVVHDDDEADDVHVPSQHDEHSVKNRN 102
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 597 LSNYHIIGEENNEIAMSTL--WTEKVYSNEKNY 689
+S YHI+ E ++ ++ L W EKVY N K Y
Sbjct: 210 MSPYHIVYGEWRKMQLAELEEWREKVYHNSKIY 242
>10_06_0010 +
9574265-9574524,9574629-9574956,9576663-9576788,
9576948-9577067,9577350-9577562,9577653-9577764,
9578033-9578217,9578310-9578660,9578826-9579383
Length = 750
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 565 YI*DGCFSDSNLIYGMYSSKSISLSFSMNTCIHTVF 458
Y GCF +IYGM + + + +S N +H+ F
Sbjct: 363 YCGTGCFHRRKVIYGMRTGREGTTGYSSNKELHSKF 398
>08_01_0998 - 10136050-10138356
Length = 768
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 537 LSEKHPSYIYRLIVVLNDTKLSNYHIIGEENNEIAMSTLWTEKVYSNEKNYG 692
LS PS I L+ L+ LSN H+ GE + + TL +YSN N+G
Sbjct: 633 LSGSIPSSISNLMS-LSSLNLSNNHLSGEIPSGYQLRTLADPSIYSN--NFG 681
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +3
Query: 396 KPVTNQIFDTDLYKTNKPNTAKTVW-MHVFIEKD-KEIDFDEYIPYIRLLSEKHPSYIYR 569
K T Q +T T P T K V + I + + D ++ + Y+R K P Y Y+
Sbjct: 374 KKKTQQQRNTQRRHTALPYTRKDVSNVGTTINSETRNTDMNQVMEYLRQKEAKDPGYYYK 433
Query: 570 LIVVLNDTKLSNYHIIGEENNEIAMSTLWTEKVYSNEKNYGNVKF 704
L + N+ S + G +LW + + + N N+K+
Sbjct: 434 LTLDENNKVKSMFWTDG-SLTRAEFESLWLQMI--AQYNLENIKY 475
>12_02_0961 -
24851687-24851962,24852134-24852405,24852521-24852953,
24853554-24853676,24853681-24853686
Length = 369
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 447 PNTAKTVWMHVFIEKDKEIDFDEYIPYIRLLSEKHPSYIYRLIVVLNDTKLSNYHIIGEE 626
PN++++ H IE++K D DE+ Y +H Y Y ++ +NY + GEE
Sbjct: 202 PNSSRSHVKHEMIEEEKSDDDDEHADY------EHADYYY--------SRFANY-LTGEE 246
Query: 627 NNEI 638
EI
Sbjct: 247 REEI 250
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 372 TLMPEAQLKPVTNQIFDTDLYKTNKPNTAKTVWMHVFIEKDKEIDFDE 515
TL+P KPVTN L K P TAK ++ +KEID +E
Sbjct: 95 TLLPSKASKPVTN-----FLRKRVDPETAKYFLEISYLFDNKEIDLEE 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,244
Number of Sequences: 37544
Number of extensions: 331953
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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