Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f12
         (387 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p pro...    29   2.1  
AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-P...    29   2.1  
AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-P...    29   2.1  
AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA...    29   2.8  
AF273708-1|AAL35411.1|  118|Drosophila melanogaster PFTAIRE-inte...    27   6.4  
AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA...    27   6.4  

>AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p
           protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 HCCCYCWNPCAKPACCSN 212
           +CC YC +PC    CCSN
Sbjct: 752 NCCNYCCSPCG--CCCSN 767


>AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-PB,
           isoform B protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 HCCCYCWNPCAKPACCSN 212
           +CC YC +PC    CCSN
Sbjct: 151 NCCNYCCSPCG--CCCSN 166


>AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-PA,
           isoform A protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 HCCCYCWNPCAKPACCSN 212
           +CC YC +PC    CCSN
Sbjct: 752 NCCNYCCSPCG--CCCSN 767


>AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA
            protein.
          Length = 1114

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 64   RLSIILNRIPVXKFRKGGAS 123
            RL+   NRIPV  FR+GGA+
Sbjct: 1016 RLTTTTNRIPVTTFRRGGAA 1035


>AF273708-1|AAL35411.1|  118|Drosophila melanogaster
           PFTAIRE-interacting factor 2 protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C  PC  P CCS
Sbjct: 94  TPCCSPCCGPCCSP-CCS 110



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C  PC  P CCS
Sbjct: 82  TPCCTPCCTPCCTP-CCS 98



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C +PC  P CCS
Sbjct: 90  TPCCTPCCSPCCGP-CCS 106


>AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA
           protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C  PC  P CCS
Sbjct: 94  TPCCSPCCGPCCSP-CCS 110



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C  PC  P CCS
Sbjct: 82  TPCCTPCCTPCCTP-CCS 98



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 156 THCCCYCWNPCAKPACCS 209
           T CC  C +PC  P CCS
Sbjct: 90  TPCCTPCCSPCCGP-CCS 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,823
Number of Sequences: 53049
Number of extensions: 209801
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)