Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f10
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    31   0.60 
U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    30   1.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin prot...    28   4.2  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    27   7.4  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        27   9.7  
U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    27   9.7  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    27   9.7  

>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 412 RGQPGELFPDKPWKGQQNEPNP-AVVGMSGIQQTPVG--GEPQGQASPGIFNSRGA 570
           +G PG      P +GQ  +P   A+VG++G +  P G  GEP  Q  PG+    GA
Sbjct: 185 QGPPGSAGRAGP-RGQAGQPGTIAIVGLAG-RPGPQGPLGEPGAQGEPGVDGKDGA 238


>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +1

Query: 415 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADG 579
           G PGE   D P +G     +P   G SGI   P    P G A P      G A G
Sbjct: 220 GMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPP---GPPGMAGPDGIPGMGGAKG 271


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -2

Query: 524 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 345
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 344 STFSSSMYSWHSSAFS 297
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -2

Query: 524 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 345
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 344 STFSSSMYSWHSSAFS 297
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 279
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 YRCEIRDGKYFIAAVGCRKPKIPENALECHEYI 327
           Y+CEIR GK    AVGC    I EN  + ++ I
Sbjct: 243 YQCEIRPGKRSHRAVGC---SIVENGRDINKVI 272


>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +1

Query: 325 IEDENVEFPTCCARLRCVVEVNGERIVQTRGQPGELFPDKPWKGQ--QNEPNPAVVGMSG 498
           IE ENVE  T  A L+ +   N + I+Q   +   L  +   KG+  +N      +G   
Sbjct: 444 IESENVELITRLATLQKIHSENADSILQLESENSRLRREVTEKGELIENLIREKPLGTGF 503

Query: 499 IQQTPVGGEPQGQASP 546
            QQ  +G        P
Sbjct: 504 QQQNNLGSSSSSSVQP 519


>AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin protein
           21 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 573 RCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHYSL 394
           R + ++ + R       A  RC+L +A+  N++ +LVL    WF+   F  L S +HY++
Sbjct: 254 RLAMSIGFYRSYTNAHSAVARCML-SANFLNAKAFLVLYW--WFLLVSFISLCSAIHYTI 310


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 390 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 286
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
            protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 576  IRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHY 400
            I C  A+KYSRR L +   TDR          +++W         + E   + P    Y
Sbjct: 1019 INCGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKY 1077


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 399 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDS 268
           SLS+ FD  T+    +   D++  D F   +  F   WFST+ +
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTAQT 262


>Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC455.4 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 344 STFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISHL*R 225
           ST   + YS+     S ++GF H    MKY   L +HL R
Sbjct: 11  STLFGNAYSYKFLVISPVYGFSH----MKYMAELANHLAR 46


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 250 GKYFIAAVGCRKPKIPENALECHEYIE-DENVEFPTC-CARLRCVVEVNGERIVQTRGQ 420
           GK+ I+ VG  KPK+   ++     I  +  + F  C C      +   GERIVQ R +
Sbjct: 265 GKFIISQVGDDKPKLTLQSMIVGFIINFNSAIHFLLCYCLHNVFTISECGERIVQKRSR 323


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -2

Query: 518 PTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRN 366
           PT      L  T+AGFG     + G + N SPG  L     SP +ST   N
Sbjct: 357 PTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPG-SLASASASPTSSTCDHN 406


>U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical
           protein ZC513.5 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = -2

Query: 575 SAAPLLLNIPGDA*PWGSP--PTG-VCWMPLIPTTA---GFGSFCWPFHGLSGNSSPGCP 414
           +A  L ++IP D+  WG P  P G V +  ++   +   G   F W F+    ++ P C 
Sbjct: 212 AAMCLAVSIPIDSYFWGRPLWPEGEVMFFNVVENRSHEYGTQPFLWYFY----SALPRCL 267

Query: 413 LVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSW 315
           L  T+L P      R   Q V  S     +YS+
Sbjct: 268 LTTTLLVPLGLLVDRRLPQIVLPSVIFIFLYSF 300


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -2

Query: 518 PTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRN 366
           PT      L  T+AGFG     + G + N SPG  L     SP +ST   N
Sbjct: 357 PTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPG-SLASASASPTSSTCDHN 406


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -2

Query: 518 PTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRN 366
           PT      L  T+AGFG     + G + N SPG  L     SP +ST   N
Sbjct: 385 PTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPG-SLASASASPTSSTCDHN 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,437
Number of Sequences: 27780
Number of extensions: 341607
Number of successful extensions: 1090
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)