Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f09
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    30   0.30 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.69 
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    28   1.2  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.8  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   3.7  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.9  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.5  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 262 YMILVSLTNLIQNEITVTVHFAIKVINTTKDWFV 161
           ++I  S    I+ EI V+ H A  ++NTT  WFV
Sbjct: 15  FIISFSYAFSIKQEIIVSSHNASSILNTTAFWFV 48


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 320 LLVALLGVSMSACAFASQPV 379
           L VALLG+S+  C FAS P+
Sbjct: 132 LTVALLGMSLYVCGFASGPI 151


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 242 QRHENHVDTINAVGENSHAAQIKMRALLVA-LLGVSMSACAFASQPVELELDDDDVTQKL 418
           +R  N  D I ++   +  + I+ RA L+     +     AFA  P+E+E  ++DV   L
Sbjct: 98  RRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDL 157

Query: 419 SNVSFARRITK 451
             + F +  +K
Sbjct: 158 HFICFVKGKSK 168


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 549 DCFDITAISKSKDVTAVRNALDFPFPITSRIVGFV 445
           D  D TAI KS    +V N LD P P+T+ I  FV
Sbjct: 448 DHTDFTAIVKSY-FESVDNPLDIPKPLTNTINKFV 481


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 99  IQFFDTDAVHRAVYLSIAPI---NTNQSFVVFITLIAK*TVTVIS 224
           ++FF   A++++VY+SI P    +  +  + + TL+A   V VIS
Sbjct: 707 LEFFLNPAIYKSVYVSIQPSYYRSAGRLLMRYRTLLASFPVVVIS 751


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 200 KMNSDSNFILNQIRQRHEN 256
           K NS+  ++LN IR RH+N
Sbjct: 162 KFNSNFAYLLNTIRTRHDN 180


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 469 YWKWKIQCISDGSDILAFTYRCDVEAIVVAS 561
           YWK KI C S GS+I    +  D   ++  +
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGA 147


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 313 HLDLSGMRILTDRVNGIYMILVSLTNLIQNEITV 212
           HLD SG  I  + VNG    ++   + + N+ TV
Sbjct: 365 HLDTSGFPITVEGVNGTGRFILFNLSSVANDSTV 398


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 313 HLDLSGMRILTDRVNGIYMILVSLTNLIQNEITV 212
           HLD SG  I  + VNG    ++   + + N+ TV
Sbjct: 285 HLDTSGFPITVEGVNGTGRFILFNLSSVANDSTV 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,155
Number of Sequences: 5004
Number of extensions: 44046
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)