Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f08
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.012
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 0.79
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 0.79
12_02_0046 + 12830974-12832386 27 2.4
04_03_1017 + 21747044-21748051 27 2.4
11_06_0610 - 25449085-25453284 27 3.2
03_01_0515 - 3864796-3865425 27 3.2
02_04_0413 + 22681957-22682035,22682253-22682788 27 3.2
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 4.2
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 4.2
04_03_0801 - 19828175-19828770,19828913-19828994 26 5.6
09_03_0192 + 13344558-13344942,13345038-13345591 26 7.4
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 7.4
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 26 7.4
08_02_1035 - 23840606-23841109,23841194-23841199 25 9.7
08_02_0186 + 13965960-13966424 25 9.7
08_01_0084 - 613255-613989 25 9.7
08_01_0082 - 588269-588434,590800-591653 25 9.7
07_03_1107 - 24024387-24024497,24025799-24026410 25 9.7
07_03_1095 + 23926977-23927657 25 9.7
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 25 9.7
04_04_0110 + 22840636-22840720,22840958-22841310 25 9.7
04_03_0803 - 19835284-19836050,19836337-19836418 25 9.7
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 25 9.7
02_05_0805 - 31859201-31860151 25 9.7
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 68 GXCPPVCSPPDCRPICGPASPLLCQSSVPP 157
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 126 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 248
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 89 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 77 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 184
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 175
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 202
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 GXCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPCINIYSC 205
G C CS +C P P SP CQ PPT C +P PC C
Sbjct: 145 GCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PCSESGCC 185
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 137 CQSSVPPTQRCYPVNP 184
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 175
CPP P P G +P++ VPP C+P
Sbjct: 351 CPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFP 384
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = +2
Query: 68 GXCP-PVCSPPDC--RPICGP 121
G C P CSPP C +P+C P
Sbjct: 185 GGCKKPCCSPPPCPWQPVCPP 205
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 80 PVCSPPDCRPICGPASPLL 136
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 139 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQW 231
P++ ATN T L C ++ HSNY W
Sbjct: 129 PDEEATNHTALPCPG-ELLVEEHHSNYGEPW 158
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 109 DLWTCISAPLPEQRATNT--TVLSCKSLHQHIQL 204
D W + +P+ R T T + LSC + QHIQ+
Sbjct: 1211 DYWEKVK-DIPDLRVTRTLASFLSCSEILQHIQI 1243
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 141 WQRSGDAGPQIGRQSGGEQTGG 76
W GD G G + GG TGG
Sbjct: 81 WAAGGDTGATAGGRVGGVATGG 102
>08_02_0186 + 13965960-13966424
Length = 154
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
P +CS C+P G P+ S PP + P P + C
Sbjct: 46 PTICSGEGCQPPPGQPLPIYGYPSPPPPSQ--PAGPSSHTPPC 86
>08_01_0084 - 613255-613989
Length = 244
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 173 DSTVVLVARCSGKGAEMQVH 114
D TV + RC+G+GAE VH
Sbjct: 102 DGTVTVALRCTGEGAEF-VH 120
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 173 DSTVVLVARCSGKGAEMQVH 114
D TV + RC+G+GAE VH
Sbjct: 104 DGTVTVALRCTGEGAEF-VH 122
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQ 163
PP SPP P+ P SP + PT+
Sbjct: 107 PPASSPPVEAPVASPPSPAAEAPATIPTK 135
>07_03_1095 + 23926977-23927657
Length = 226
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 149 VPPTQRCYPVNPCINIYSCY 208
V P+QR Y + C +Y CY
Sbjct: 90 VKPSQRAYECSVCGKVYWCY 109
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQS 145
PP SPP CRP P LLC S
Sbjct: 3 PPPPSPP-CRPRVKPERALLCFS 24
>04_04_0110 + 22840636-22840720,22840958-22841310
Length = 145
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 95 PDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
PDC CGP SP C+ + + C Y C
Sbjct: 99 PDCTHACGPCSP--CRRVMVSLRCAEAAESCPVAYRC 133
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 86 CSPPDCRPICGPASPLLCQSSVPPTQRC 169
C DC CG P+ C PP RC
Sbjct: 208 CDHADCGGWCGGQPPINCPPP-PPPSRC 234
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 142 EQRATNTTVLSCKSLHQHIQLLHS 213
EQRA + +SC L + + +LHS
Sbjct: 83 EQRANVQSAISCDDLKREVTVLHS 106
>02_05_0805 - 31859201-31860151
Length = 316
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPT 160
CP C+ P +P+ GP +P L VPP+
Sbjct: 196 CPGQCAWPFHQPVYGPQTPAL----VPPS 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,126,362
Number of Sequences: 37544
Number of extensions: 166897
Number of successful extensions: 588
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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