Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f07
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    30   0.16 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   2.5  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   3.4  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 338 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTIS 436
           NP ++  D YN     L++ V K  +HD+NT+S
Sbjct: 141 NPSRILLD-YNRAGTPLLEIVTKPCFHDVNTVS 172


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +2

Query: 293 PAGSSHVNRPCFGQCNPPKLYAD------TYNYLNEKLMQPVVKEVYHDLNTIS 436
           P G    N+PCF +     +++       T N    K + P   EV  DLNT S
Sbjct: 368 PGGLRRANKPCFNKETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLADLNTAS 421


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 161 YYQN*KRFSPYSHNQHFXXDS*HYPIHLKFFVYXRP 54
           Y  N   FSPY H +H    S +YP    + VY  P
Sbjct: 470 YESNNSSFSPYYHKRH-RQISPYYPTSSVYGVYESP 504


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 380 HLNSYKCQHKVLVDCIDQSKVYLHD*SLQD 291
           H+   K  H + + C+D +  YL + SL+D
Sbjct: 356 HMEKVKSLHSLSIICLDMAISYLMEFSLED 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,511
Number of Sequences: 5004
Number of extensions: 29189
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)