Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f07
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0276 - 11485123-11485136,11486549-11487557                       28   3.3  
06_01_0769 - 5745324-5746970                                           27   5.8  
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    27   5.8  
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344...    27   7.7  

>05_03_0276 - 11485123-11485136,11486549-11487557
          Length = 340

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 149 NSDNNPQNLANSYST-NHGSC 208
           N+DNNP N     +T NHGSC
Sbjct: 292 NTDNNPSNTNGDDTTNNHGSC 312


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 257 HAR-ENHSYCDCDNRLVDNFHDL*NNCLLSSEDYY 156
           H R +NH++C+ D+R++D F    N  +L S+ Y+
Sbjct: 254 HLRLQNHTFCEEDHRVLDRF----NWMVLRSDSYF 284


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 219 VVTVTIAVVLTGMAASIHTLVNQVIL 296
           ++ VT+A VL+G+A+S+    +QV+L
Sbjct: 221 IIPVTVASVLSGLASSLCQWASQVVL 246


>07_03_0328 +
           16833423-16833541,16833638-16833791,16834449-16834490,
           16834964-16835104,16835471-16835728,16835857-16836492
          Length = 449

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 428 CLDHDKLP*QLVALVFHLN---SYKCQHK-VLVDCIDQSKVYLHD*SLQDN 288
           C  H KLP +L+  +        ++C +K  L  CI   K  +H+ SLQ N
Sbjct: 397 CSIHSKLPVRLLRSLERWGLAVQWRCNYKRTLTKCIVHCKSLVHELSLQQN 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,999,942
Number of Sequences: 37544
Number of extensions: 162450
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)