Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f04
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 129 4e-31
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.73
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.9
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 5.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.1
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac... 25 9.0
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 9.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 9.0
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 129 bits (311), Expect = 4e-31
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Frame = +2
Query: 113 KNSPENEELIENGDAP-NEGRSNIKGDEL-NIAVLLFLYTLQGIPLGLA-GAVPMLLQNK 283
+N+P + IEN N G + + + NI L+ LY +QG+P+GL G++P L+
Sbjct: 21 ENAPASIASIENDTLEANVGSTPLTAKQKRNIYFLILLYLIQGVPMGLVRGSIPYFLK-P 79
Query: 284 GITYTQQAEFSLVNWPFSVKLLWAPIVDAMFWPEFGRRKTWLVPVQYLIGIVMIIVSYCV 463
++Y+ A +SL +P+S+K+LW+PIVD + FGRRKTW+VP LI +++ SY V
Sbjct: 80 NVSYSDLATYSLAAYPYSLKVLWSPIVDTYYCRSFGRRKTWVVPCMLLISSTLLLFSYNV 139
Query: 464 TDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHAST 619
W+ G + T SFLL+ F+ ATQDIAVDGW+L ML + +AST
Sbjct: 140 DTWIS-KGSSYINSFTTWSFLLV-FVCATQDIAVDGWSLNMLNPEQLSYAST 189
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 28.7 bits (61), Expect = 0.73
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -3
Query: 558 ISCVAAKKFNNRKDTVSIVIEGGSPSIPSQSVTQYDTIIITIPIKYWTGTSQVFLLPNSG 379
I+ +A K N K V++ + S ++DT+I T+ +KY T + L G
Sbjct: 46 INIIALSKKINSKGFTVYVLDATTRRSALLS-GKHDTMIFTLFVKYITSLNHPEYLLLGG 104
Query: 378 QNIASTIGAHNSFTL 334
+ + I H S TL
Sbjct: 105 YSYGARISMHKSITL 119
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -3
Query: 591 FNIVKAQPSTAISCVAAKKFNNRKDTVSIVIE-GGSPSIPSQSVTQYDTIIITIPIKYWT 415
FN ++ PST + + K NR T+S ++ G + S S T + +I Y +
Sbjct: 134 FNTIRLIPSTNVINTSHYKGFNRYPTISSTVKVGKRAATASFSYTNVSSSVIA--TAYTS 191
Query: 414 GTSQVFLLPNSGQNIASTIGAHNSFT 337
+S + P+ Q+ S I S T
Sbjct: 192 ASSTILSSPSVEQSTPSIITQTESST 217
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 335 SVKLLWAPIVDAMFWPEFGRR 397
S+KL W +D MF +FG+R
Sbjct: 695 SIKLRWENRIDQMFTKKFGKR 715
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 434 IVMIIVSYCVTDWLGIDGEPPSMTILTVSFLLLNFLA 544
++ I+ +C+ DW D +PPS+ ++ L+L FL+
Sbjct: 575 VITIVYKWCI-DWKAKDLQPPSL----LNMLILMFLS 606
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 106 C*SHNCCSYSLKYITNVLKCQC*KNTSVEFT 14
C S+ C S S C+C +N+S+EFT
Sbjct: 403 CYSYICRSRSCPSKYQCYSCRCARNSSLEFT 433
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 371 MFWPEFGRRKTWLVPVQY 424
M WP F WL+P+QY
Sbjct: 154 MVWPFFQTVNFWLMPLQY 171
>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 159
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 173 SNIKGDELNIAVLLFLYTLQGIPLGLAGAVPMLLQNKGI 289
S++KG EL I ++ + LQ I + GAV +++ +
Sbjct: 11 SDLKGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDV 49
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 388 WKKKNLACTRPVLDWNSNDYSI 453
+ + NL T +LDWN YS+
Sbjct: 44 YSEGNLKLTTELLDWNPETYSV 65
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 484 WGTTFNDNTYSIFSVIKFFSGHT 552
W T +N Y S+ FFS HT
Sbjct: 125 WLETIRENNYDEASIPSFFSPHT 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,638
Number of Sequences: 5004
Number of extensions: 54754
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -