Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f04
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   3.0  
11_06_0117 + 20302795-20304816                                         28   7.0  
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927...    27   9.2  
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288...    27   9.2  

>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
 Frame = +2

Query: 77  AIRAAIMTLTKRKNSPENEEL--------IENGDAPNEGRSNIKG 187
           ++ +AI  L + +N P+ ++L        IE GD PNE R++I+G
Sbjct: 35  SLESAINWLLEHENDPDIDQLPLIPREINIECGDTPNEARNDIQG 79


>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 401 TWLVPVQYLIGIVMIIVSY-CVTDWLGIDGEPPSMTILTVS 520
           +WL  +Q+L  + +  V+   ++DW  +  + PS+T+L++S
Sbjct: 190 SWLTRLQWLKYLYLSSVNLSAISDWAHVVNKIPSLTVLSLS 230


>06_02_0365 +
           15190841-15190988,15191296-15191754,15192692-15192782,
           15192902-15193003,15193126-15193228,15193548-15193685,
           15193912-15193974,15195042-15195124,15196312-15196411,
           15196640-15196717,15196834-15196941,15197987-15198067,
           15200179-15200220,15200221-15200283,15200426-15200482
          Length = 571

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 435 IPIKYWTGTSQVFLLPNSGQNIASTIGAHNSFTLKGQF 322
           +P + W+    + +L N+  N+ S +  HN F   GQF
Sbjct: 338 VPEQEWSMNKIMRVLVNNNSNMLSYVENHNQFFAFGQF 375


>02_02_0473 -
           10727908-10728052,10728367-10728440,10728660-10728818,
           10729606-10729774,10730216-10730355,10730469-10730879,
           10731055-10731334,10731508-10731571,10731995-10733281,
           10733363-10733822,10733988-10734356
          Length = 1185

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 340 KTIMGS-YSGCNVLA*IWKKKNLACTRPVLD 429
           KT  G+ ++GC +L  +W  K  A  RPV+D
Sbjct: 900 KTDAGAIFAGCPMLLQLWVAKRFAIGRPVVD 930


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,918
Number of Sequences: 37544
Number of extensions: 316381
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)