Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f03
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 35 0.010
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.7
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 3.6
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 26 3.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.8
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 4.8
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 6.3
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.3
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 25 6.3
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 34.7 bits (76), Expect = 0.010
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 115 RFMCTVGLAKKPPIPVFGVEGRYVSALYSAAAQKKSI 225
R + T + PP+ ++G++G Y S+LY+AA ++ +
Sbjct: 21 RSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKL 57
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 411 RPFSATSSRKFMAVSGIPASFATCFNIFAFAAELITQVSMKSIIF 277
R + T+ +F+ +S + A C IF + +T K+IIF
Sbjct: 138 RLIAVTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIF 182
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 465 CATITARNLLIIFLKSFKRPFSATSSRKFMAVSGIPAS 352
CA + N+++ + +F RPF R F G P+S
Sbjct: 2304 CAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSS 2341
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 386 LELVAEN-GRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLD 511
L+LV E+ R++L K + K+LA VAH + + E T+Q L+
Sbjct: 319 LQLVYESFSRVELGVKSLKKYLAKYVAHHGKLINET-TSQALE 360
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 227 DDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKML 337
+D+ L L+K + P ++DFI C + S K K++
Sbjct: 150 EDIIAVLDRLSKTPIPPSIVDFIRACTV-SYGKVKLV 185
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 464 HRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIXLTE 586
HRNEAL E I S +K + L KF + + LTE
Sbjct: 54 HRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKLQLTE 94
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 182 MYQHSIVRLHKKNQLDDVEKHLQILNKELLK 274
+Y H IVR + + D+++ HL + ++ K
Sbjct: 122 LYTHEIVRAYSEKSRDELDPHLYAIAEDSYK 152
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -2
Query: 408 PFSATSSRKF---MAVSGIPASFATCFNIFAFAAELITQVSMKSIIFG 274
PFS S + + +SG P T +F F EL QV + FG
Sbjct: 146 PFSPVSEKVYDPSFTMSGAPQDSNTSVIVFGFPPELTNQVIAEFSRFG 193
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 56 FFLFHKLQICLLISCPAFLEDSCVPL 133
FFLF L C+ + CP L S +PL
Sbjct: 159 FFLFVTLLQCIPLFCPEHLGLSFIPL 184
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 386 LELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFV 556
L LV N LL+ M+ KF A N+ + E +S RK++ + KFV
Sbjct: 266 LSLVESNS---LLKNMVAKFEAGKYKVLNKKIAETSLTDECINSYRKLMNECSTKFV 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,659
Number of Sequences: 5004
Number of extensions: 52753
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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