Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f03
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...    73   2e-13
02_05_0759 + 31545473-31546204                                         39   0.003
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457...    29   2.1  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    29   2.8  
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958...    27   8.5  
01_06_0785 - 31985455-31988463                                         27   8.5  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
 Frame = +2

Query: 212 KKNQLDDVEKHLQ-ILNKELLKPKMIDFIETCVINSAAKAKMLKQVANEAGMPDTAINFL 388
           K N LD VE  ++ ++      P    FI+   +    + K + ++  EAG  D   NFL
Sbjct: 60  KANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFL 119

Query: 389 ELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEGK 568
            ++A+NGRLK + ++  +F+ + +AH+ E    V T  PL +   K L + L+  + + K
Sbjct: 120 AVLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNK 179

Query: 569 NIXLTEKVD 595
            I + +K+D
Sbjct: 180 TILIEQKID 188


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/74 (22%), Positives = 39/74 (52%)
 Frame = +2

Query: 224 LDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAE 403
           L+     L+ L K   +  + +F +   +    KA+++ ++A  + +    +NFL +V +
Sbjct: 78  LEATVSDLEKLEKIFAEEAIAEFFDNPTVPRDEKAQLIDEIAKSSELQAHVVNFLNVVVD 137

Query: 404 NGRLKLLRKMINKF 445
           NGR  L+ +++ +F
Sbjct: 138 NGRAGLMTQIVREF 151


>04_04_0941 -
           29544252-29544355,29545155-29545299,29545637-29545775,
           29545836-29545893,29546012-29546123,29546311-29546484,
           29547276-29547450,29547531-29547589,29548008-29548109,
           29548178-29548212,29549017-29549111,29549638-29549686,
           29549754-29549812,29549978-29550051,29550204-29550296,
           29550389-29550769
          Length = 617

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 476 ALCEVITAQPLDDSTRKILMDALKKFVKEGKN 571
           AL E+  +   DD+ R + +DAL  FVK GK+
Sbjct: 112 ALVELTVSPHSDDAIRDLALDALMDFVKLGKD 143


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
 Frame = +2

Query: 221  QLDDVEKHLQILNKEL-LKPKMIDFIETCVINSAAKAKMLKQVA-----NEAGMPDTAIN 382
            +L + EK++QIL+KEL  K + +D ++   +N  A+ ++  +VA     N        + 
Sbjct: 1375 ELVNAEKNVQILDKELKQKREEVDSLQAS-LNEEAQKRIEGEVALLAMENLHSQSQEEVR 1433

Query: 383  FLELVAE--NGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLD-DSTRKILMDALKKF 553
             L L  E  +G+L  +    N+ L  M+   +E +  V+  Q L  + T K L D L+KF
Sbjct: 1434 GLVLKIETLHGKLNEMENS-NRDLKNMICKHSEEI-HVLGEQNLSAELTIKGLHDQLEKF 1491

Query: 554  VKEGKNIXLTEKV 592
             +   NI L  +V
Sbjct: 1492 TE--MNIGLQNEV 1502


>03_04_0037 +
           16694760-16695227,16695563-16695642,16695735-16695828,
           16695973-16696071,16696650-16696742,16696822-16696941,
           16697422-16697525,16697734-16697806,16698023-16698085
          Length = 397

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +2

Query: 122 CVPLDSLKSRQYQYLVLKGGMYQHSIVRL---HKKNQLDDVEKHLQILNKELLK 274
           C+ + ++K + +QYL   GGM  H+++R+   + +++L+D + ++Q+     LK
Sbjct: 290 CLAIINMKDKTFQYLDSFGGM-DHAVLRILARYIRDELND-KSNIQVDTSSWLK 341


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
 Frame = -2

Query: 558 FTNFLRASIRIF----LVLSSSGCAVITSHNASFLCATITARNLLIIFLKSFKRPFSATS 391
           FTN+LRA + I          S C    SH+        +   ++I+  KSF  P++   
Sbjct: 187 FTNWLRAELEIHGISCFASDRSRCRSSHSHDTIERIMNASTYGVVILTRKSFGNPYTIEE 246

Query: 390 SRKFMAVSG-IPASF 349
            R F      IP  F
Sbjct: 247 LRNFFGKKNLIPIFF 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,563
Number of Sequences: 37544
Number of extensions: 297025
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)