Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f03
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    77   1e-14
U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    77   1e-14
AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical ...    34   0.088
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    31   0.47 
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    29   1.9  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    29   1.9  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    29   1.9  
AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z48621-3|CAA88541.2|  210|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +2

Query: 209 HKKNQLDDVEKHLQILNKELLKPKMI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINF 385
           HK+N+LD +   L  +       K   +F+    + +  K   ++ ++ + G+     NF
Sbjct: 43  HKQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNF 102

Query: 386 LELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEG 565
           L L+AENGRL  L  +++ F ++M AHR E   +V +A+ L  S +K L DAL K  K G
Sbjct: 103 LGLLAENGRLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSG 162

Query: 566 KNIXLTEKV 592
           + + +T  V
Sbjct: 163 QKLTVTYAV 171



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 112 RRFMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKKSI 225
           R F  +  LAK    K PI V GVEGRY +ALYSA  ++  +
Sbjct: 7   RGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKL 48


>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +2

Query: 209 HKKNQLDDVEKHLQILNKELLKPKMI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINF 385
           HK+N+LD +   L  +       K   +F+    + +  K   ++ ++ + G+     NF
Sbjct: 64  HKQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNF 123

Query: 386 LELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEG 565
           L L+AENGRL  L  +++ F ++M AHR E   +V +A+ L  S +K L DAL K  K G
Sbjct: 124 LGLLAENGRLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSG 183

Query: 566 KNIXLTEKV 592
           + + +T  V
Sbjct: 184 QKLTVTYAV 192



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +1

Query: 73  ITNLLINIMSCIFRR-FMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKKSI 225
           +T L   +M+ + +R F  +  LAK    K PI V GVEGRY +ALYSA  ++  +
Sbjct: 14  LTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKL 69


>AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.6 protein.
          Length = 446

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -2

Query: 408 PFSATSSRKFMAVSGIPASFATCFNIFAFA 319
           PFSA+ SR F   S I A F  CF+IF F+
Sbjct: 9   PFSASFSRVFSVFSPISAFFCFCFSIFPFS 38


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -2

Query: 339 FNIFAFAAELITQVSMKSIIFGFKSSLFKICKCFSTSSN*FFLCSRTIE 193
           F +  +A+E+  Q  M   IFGFKSS F +    S  S+ F+LC + +E
Sbjct: 137 FLVSKYASEVRYQ-KMSMFIFGFKSSAFSVF-ISSLMSSCFYLCIKFVE 183


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 392 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 517
           L A+  + ++L+ +I K  ++   HR+  +CE    + L+DS
Sbjct: 190 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 231


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 392 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 517
           L A+  + ++L+ +I K  ++   HR+  +CE    + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 392 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 517
           L A+  + ++L+ +I K  ++   HR+  +CE    + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211


>AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical
           protein Y102A11A.6 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 562 FLYELFKGIHKDFSGTIIKWLCSYYFT*CLIS-VRYHNSKKLV 437
           ++ ++   +H+D+SGTI+    SY +T    S + YH+S K++
Sbjct: 183 YILKIVPSVHEDYSGTILN---SYQYTFGHKSYITYHHSGKII 222


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 260 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 424
           +EL   K    +E C  +   +A ++K + +     +   PDT    L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510

Query: 425 RKMINK 442
           + +I K
Sbjct: 511 KMLIEK 516


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 260 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 424
           +EL   K    +E C  +   +A ++K + +     +   PDT    L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510

Query: 425 RKMINK 442
           + +I K
Sbjct: 511 KMLIEK 516


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 260 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 424
           +EL   K    +E C  +   +A ++K + +     +   PDT    L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510

Query: 425 RKMINK 442
           + +I K
Sbjct: 511 KMLIEK 516


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 260 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 424
           +EL   K    +E C  +   +A ++K + +     +   PDT    L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510

Query: 425 RKMINK 442
           + +I K
Sbjct: 511 KMLIEK 516


>Z48621-3|CAA88541.2|  210|Caenorhabditis elegans Hypothetical
           protein R07B1.4 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 179 GMYQHSIVRLHKKNQLDDVEKHLQILNKELLK 274
           GM Q +  +  K+N L DVEK+  I+ K LL+
Sbjct: 113 GMIQANKEQFFKENVLPDVEKYAPIVEKFLLE 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,440
Number of Sequences: 27780
Number of extensions: 293965
Number of successful extensions: 882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)