Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f02
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70204-5|CAI46566.1|  379|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70204-4|CAA94114.2|  437|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY305832-1|AAR11977.1|  437|Caenorhabditis elegans nuclear recep...    29   3.1  
AY305831-1|AAR11976.1|  437|Caenorhabditis elegans nuclear recep...    29   3.1  
AF273775-1|AAG15124.1|  383|Caenorhabditis elegans nuclear recep...    29   3.1  
AF273774-1|AAG15123.1|  433|Caenorhabditis elegans nuclear recep...    29   3.1  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    28   5.4  
Z92785-2|CAB07200.1|  344|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 160 AKRYRNNLTLLETTFVTLKFVCILFA---DFRLPTCQISTTH**FSVIVIGLKNHNI 321
           + +Y   ++++   FV +  VC        FR+P   ISTT   FS  + G++ +NI
Sbjct: 260 SSKYARVISVVNIIFVIISIVCFCLKTHPSFRIPDIDISTTMGNFSAPLNGVQMNNI 316


>Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 160 AKRYRNNLTLLETTFVTLKFVCILFA---DFRLPTCQISTTH**FSVIVIGLKNHNI 321
           + +Y   ++++   FV +  VC        FR+P   ISTT   FS  + G++ +NI
Sbjct: 260 SSKYARVISVVNIIFVIISIVCFCLKTHPSFRIPDIDISTTMGNFSAPLNGVQMNNI 316


>Z70204-5|CAI46566.1|  379|Caenorhabditis elegans Hypothetical
           protein C11G6.4b protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 139 RNFFLPFMILECGYMCCLNNRTDILFL 165


>Z70204-4|CAA94114.2|  437|Caenorhabditis elegans Hypothetical
           protein C11G6.4a protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 197 RNFFLPFMILECGYMCCLNNRTDILFL 223


>AY305832-1|AAR11977.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 197 RNFFLPFMILECGYMCCLNNRTDILFL 223


>AY305831-1|AAR11976.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 197 RNFFLPFMILECGYMCCLNNRTDILFL 223


>AF273775-1|AAG15124.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 143 RNFFLPFMILECGYMCCLNNRTDILFL 169


>AF273774-1|AAG15123.1|  433|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 433

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  RNYFHIFLINXIKYICCFRNLLDFEFL 8
           RN+F  F+I    Y+CC  N  D  FL
Sbjct: 193 RNFFLPFMILECGYMCCLNNRTDILFL 219


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 96  LYYIGLFVFLAYQSVIFPYF 155
           LY+I +FVFL    ++FP++
Sbjct: 18  LYFISVFVFLVIYLILFPFY 37


>Z92785-2|CAB07200.1|  344|Caenorhabditis elegans Hypothetical
           protein F31E9.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 459 TLVFDEAKRKDFLCGFRKRKLERKKKAQEDL 551
           +++F EAK + F+   R++KLERK++    L
Sbjct: 305 SVLFGEAKLQVFVWSQREKKLERKRRRSRGL 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,936,241
Number of Sequences: 27780
Number of extensions: 171438
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)