Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f01
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.88 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.88 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/63 (19%), Positives = 32/63 (50%)
 Frame = +1

Query: 478 LFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL 657
           +FD+  +  +RP +++P     Q      ++A   + +L+  ++    T+   YP++ ++
Sbjct: 608 IFDSASRTAVRPRYISP---ASQVCIAAALIALQIVLTLVWMIIEPPGTRF-FYPDRKQV 663

Query: 658 LXK 666
           + K
Sbjct: 664 ILK 666


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/63 (19%), Positives = 32/63 (50%)
 Frame = +1

Query: 478 LFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL 657
           +FD+  +  +RP +++P     Q      ++A   + +L+  ++    T+   YP++ ++
Sbjct: 698 IFDSASRTAVRPRYISP---ASQVCIAAALIALQIVLTLVWMIIEPPGTRF-FYPDRKQV 753

Query: 658 LXK 666
           + K
Sbjct: 754 ILK 756


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = -3

Query: 214 LCLFAGKCFELCSLAD-QSHDC 152
           LC +   CF LC   D  + DC
Sbjct: 736 LCRYEAHCFALCHCCDFDACDC 757


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 79  GVCHADD 99
           GVCHADD
Sbjct: 461 GVCHADD 467


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 YAKKKSY-EDLLRQAQDSTTDDDLLRVSEEMFNADINNA 348
           +A  + Y +D    A    T +DLL    +M+   +NNA
Sbjct: 436 FANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNA 474


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 79  GVCHADD 99
           GVCHADD
Sbjct: 461 GVCHADD 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,946
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)