Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e24
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.27 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    28   1.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.5  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   4.4  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    26   5.8  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   5.8  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   7.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.7  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 362 TIKQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYLSCRAVQDVC 496
           T  +D+ LK AG+L  K     GA ++Y     E LSC  +  +C
Sbjct: 238 TSPKDVILKVAGILTVK--GGTGAIVEYFGPGVESLSCTGMGTIC 280


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 539 LHSLVQRISSYLRRHTHPGPLCNLDTRTDPTDTVL 435
           +H  V+R  SYL+   HP  +   D  T PTD V+
Sbjct: 75  MHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM 109


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 274 FNFYKFYRELDY*NR*QIHYTHALVEYRCHNKTRYIPEMGRRFGKQNMRIPGSYN 438
           FN+    +E+DY      H +  L+    HN      +M R F K+ +++P S+N
Sbjct: 508 FNYSHRSKEIDY-----YHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFN 557


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 LMETLKHSYNNWRIW 230
           + + +K+ Y+NWRIW
Sbjct: 614 MQQGIKYMYDNWRIW 628


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 510 LLKKTHTSWTALQLRYSH*SDRYCIVAPGYSHI 412
           L K T    T L+L Y    D+Y     GYSH+
Sbjct: 133 LQKSTAPRQTGLKLNYVSKLDKYVTPLDGYSHL 165


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 440 QYLSDQCEYL-SCRAVQDVCVFLSKMKCV 523
           +YL D  +   SCR +Q  C ++S+ +C+
Sbjct: 466 EYLGDVIKLCESCRGLQKDCTYMSESRCM 494


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 89  KTKQTYPCAEGKVLKYIVSKGESGATFYELEKINGDTKALIQQLADLESAN 241
           K+ + Y C+  ++ K        G + Y L       KAL ++L D+ + N
Sbjct: 162 KSSRQYTCSSEEISKVFRHLNRLGGSEYVLHLFAQIPKALCKELTDVRTLN 212


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 376 YIPEMGRRFGKQNMRIPGSYNT-VSVGSVRVSK 471
           YI +  R  GK+N  IPG   +    GS+ V +
Sbjct: 339 YIRQCAREIGKENFFIPGEVTSGADFGSIYVGR 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,907
Number of Sequences: 5004
Number of extensions: 64440
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)