Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e21
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    28   1.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.7  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    27   1.7  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   5.3  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   5.3  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   9.3  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/87 (22%), Positives = 35/87 (40%)
 Frame = -1

Query: 429 QSATLMLKLTVSWIEAAVAVCGRLDHQVFTSHHPV*A*CKIFQIRNRILRSGDGTHHVLG 250
           ++ ++M   T  W EA   + GRL      S +P     K+     R      G    LG
Sbjct: 350 KNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERA-----GRARCLG 404

Query: 249 NDEAKSAVSAIGPLHPLNPTYNSTLKS 169
           + + +  VS +G + P    ++  + S
Sbjct: 405 SPDREGTVSIVGAVSPPGGDFSDPVTS 431


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 207 HPLNPTYNSTLKSPDAILKPEG 142
           H +NP YN++ + PD  L  EG
Sbjct: 170 HSINPAYNASFRLPDGPLWTEG 191


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 406 TNCKLD*SRSCGVRQTGPPGFHLT 335
           T C +   R CG+   GPPGF+ T
Sbjct: 147 TECAVATLRECGLGACGPPGFYGT 170


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 146 KASRFNLMITTCSGRFLI*ICVLWVCEEEDFTIKR 42
           KA R N  I   +G+ L+    +W+C++ +F   R
Sbjct: 93  KAMRHNCRILALNGKILLIRPKIWLCDDGNFRESR 127


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 310 NISDKKQNSALR*WNPPCAGQR*SQVSGQCYWASSSSEPNIQQH 179
           N S K  +++++  N P  G     V+G+   ++SSSE N+  +
Sbjct: 154 NYSRKLSSNSIKSTNAPVFGTAVKNVTGENILSASSSEENLNSN 197


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 595 PRSWETEEGIQPSGP 639
           P SWE +EG Q  GP
Sbjct: 163 PSSWEIDEGPQKEGP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,488
Number of Sequences: 5004
Number of extensions: 59082
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)