Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e21
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443...    29   4.1  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    29   4.1  
11_05_0045 - 18577329-18578338,18578704-18578917                       28   5.5  
11_01_0475 - 3669734-3671452                                           28   7.2  

>05_06_0043 +
           25143513-25143866,25144010-25144191,25144284-25144374,
           25144452-25144568,25144922-25144976,25145008-25145093,
           25145190-25145300,25145564-25145608,25145695-25145740,
           25146078-25146152,25146902-25146971,25147128-25147437,
           25147778-25147851,25147996-25148151,25148416-25148539
          Length = 631

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 SGLRIASGDFKVLLYVGFRG*RGPIALTADLASSLPSTWWV 268
           S +  + G   VL+Y+G  G R  + +    ASSLP   W+
Sbjct: 570 SSIVSSGGLISVLVYIGHPGGRDELDVVESFASSLPIDTWM 610


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 267 THHVLGNDEAKSAVSAIGPLHPLNPTYNSTLK 172
           T + LG   A +AVS  GP HP  P Y +  K
Sbjct: 101 TENALGPPAAAAAVSKKGPAHPGRPGYGAAGK 132


>11_05_0045 - 18577329-18578338,18578704-18578917
          Length = 407

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 541 GGNGTGER-VLVFLLGTLPPRSWETEE 618
           GG+G G R   V  +GT  P SW T+E
Sbjct: 20  GGDGHGHRHAAVLAIGTANPASWVTQE 46


>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 368 AADWTTRFSPHITQSKRSVKYFR*ETEFCAPVMEPTMCWATM 243
           + +WT   +P +    R+ K     T+   PV E  MCWA +
Sbjct: 208 SGEWTVTRAPVVHFDGRAEKLPSWITDMAVPVGERRMCWADL 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,570
Number of Sequences: 37544
Number of extensions: 435240
Number of successful extensions: 1039
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)