Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e21
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 163 VRGFQSAVVCWVQRMKRPNSTDR*LGFIVAQHMVGS 270
           V G+  AV  ++QR+K   +T +   F  +  +VGS
Sbjct: 447 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGS 482


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 163 VRGFQSAVVCWVQRMKRPNSTDR*LGFIVAQHMVGS 270
           V G+  AV  ++QR+K   +T +   F  +  +VGS
Sbjct: 362 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGS 397


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 163 VRGFQSAVVCWVQRMKRPNSTDR*LGFIVAQHMVGS 270
           V G+  AV  ++QR+K   +T +   F  +  +VGS
Sbjct: 681 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGS 716


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 624 NALLSFPTSRRQGAEKEHEHSFSRSIASFPEGLPQRLITIHESR 493
           N + S  +SRRQ  EK  +     +    P  + QR+    E R
Sbjct: 376 NLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHR 419


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 624 NALLSFPTSRRQGAEKEHEHSFSRSIASFPEGLPQRLITIHESR 493
           N + S  +SRRQ  EK  +     +    P  + QR+    E R
Sbjct: 344 NLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHR 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,146
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)