Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e20
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   0.60 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   1.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   3.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   3.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    24   9.7  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 133 KFATDITMEERKRDSNTGSVYQLAKT--MGIINLKENYSLNN 252
           KF  D+T + R RDS+   +YQL  T     +   +N S+NN
Sbjct: 476 KFIHDVTYDHRLRDSHR-EIYQLQGTGYRPFLRANDNASINN 516


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 225 VYDAHCFRELVHGASV*VSFPLLHCYVSGEFYH 127
           +YD    R  +HG    +  PL H + + EF H
Sbjct: 53  IYDMSDVRSFIHGR---IEMPLFHAFTTPEFSH 82


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 234 LFEVYDAHCFRELVHGASV*VSFPLLHCYVSGEFYH 127
           + + Y    +RE+ HG    V+FP L   + G+  H
Sbjct: 381 IIDSYGIATYREVNHGIVAIVTFPFLFAIMFGDLGH 416


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 438 GVRVTVILRVIVKEQEPVFRVT 373
           G ++ + LR I++EQ+P+ R+T
Sbjct: 826 GEKILLSLREIIREQDPMSRIT 847


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 439 RGTCD-CNSSCNRERAGACVSCHVSRNAPKL 350
           +GT D   +  NR++   C SCH+  +A KL
Sbjct: 769 KGTLDYLMAKANRKQIPLCRSCHMKLHANKL 799


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +1

Query: 400 FHD-YTKNYSHTYPV 441
           FHD Y ++Y+H YPV
Sbjct: 305 FHDAYLQSYTHRYPV 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,429
Number of Sequences: 5004
Number of extensions: 36289
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)