Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e20
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773...    30   0.78 
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    29   2.4  
11_03_0181 - 11301759-11301838,11302294-11303095                       27   9.6  

>07_01_0917 +
           7735696-7735896,7735907-7736404,7736481-7736813,
           7736991-7737314,7737367-7737836,7738165-7738447,
           7738527-7738640
          Length = 740

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 354 SYNPFNQNYAGET*KGPNPRGVSHYCANVRKSFR 253
           S  P +QN+ G T   P+P G+S    N RKS R
Sbjct: 115 SSTPPSQNHLGNTHSSPDPCGMSSMPPNQRKSLR 148


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 162 LLHCYVSGEFYHNTNCQDCYDY*HCQYNTTGFHF 61
           ++HCY    ++H     D +   HC   T  FHF
Sbjct: 439 IIHCYNDSIYHHLYGQSDLFSSPHCFVLTLEFHF 472


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 253 AERFPYVGAVVANTSGIWSFSCFASVILVKWIV---TSAHCVKR 375
           AE FP+V      TS +WS +   +V+L  W V   TS+H VK+
Sbjct: 227 AEAFPHVKCW---TSPVWSATSRPTVLLSTWQVTCSTSSHRVKQ 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,599
Number of Sequences: 37544
Number of extensions: 224079
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)