Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e20
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    27   6.6  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    27   6.6  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   6.6  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    27   6.6  

>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 153 CYVSGEFYHNTNCQDCYD 100
           C+ +GEF  + NC+DC++
Sbjct: 185 CFANGEFCRDCNCKDCHN 202


>Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical
           protein JC8.6a protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 153 CYVSGEFYHNTNCQDCYD 100
           C+ +GEF  + NC+DC++
Sbjct: 191 CFANGEFCRDCNCKDCHN 208


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 126 YGKIRH*HNNGGEEKRLKHWLRVPTRENNGHHKPQRELFTEQ 251
           Y K++  H  GG   +LK   R PT    G  K  + L  EQ
Sbjct: 38  YKKMKQ-HTGGGTRNKLKKKQRPPTENTEGRAKKPKVLTKEQ 78


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 RGTCDCNSSCNRERAGACVSCHVSRN 362
           R TC C+  C R   G+C+   V+++
Sbjct: 492 RSTCTCSCMCGRYPPGSCIVDEVTKD 517


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 RGTCDCNSSCNRERAGACVSCHVSRN 362
           R TC C+  C R   G+C+   V+++
Sbjct: 455 RSTCTCSCMCGRYPPGSCIVDEVTKD 480


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 433 TCDCNSSCNRERAGACVSCHVSRNAPKLQSI*PKLRWRNMKRTKSPRC*PLLR 275
           +C+    C+ +       C V+  A   Q I     W+N  R   P C PL R
Sbjct: 458 SCNVGRLCHSDTTQTTKKCSVAHCASSRQII---AHWKNCSREDCPVCKPLKR 507


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26b protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 259  RFPYVGAVVANTSGIWSFS 315
            R P+ G V A++ G WSFS
Sbjct: 1080 RMPHTGPVTADSDGQWSFS 1098


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26a protein.
          Length = 1172

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 259  RFPYVGAVVANTSGIWSFS 315
            R P+ G V A++ G WSFS
Sbjct: 1119 RMPHTGPVTADSDGQWSFS 1137


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 RGTCDCNSSCNRERAGACVSCHVSRN 362
           R TC C+  C R   G+C+   V+++
Sbjct: 492 RSTCTCSCMCGRYPPGSCIVDEVTKD 517


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 RGTCDCNSSCNRERAGACVSCHVSRN 362
           R TC C+  C R   G+C+   V+++
Sbjct: 194 RSTCTCSCMCGRYPPGSCIVDEVTKD 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,874
Number of Sequences: 27780
Number of extensions: 205822
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)