Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e11
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0754 - 26935647-26937780,26940890-26941827                       31   1.2  
11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103...    30   2.1  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    29   3.7  
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472...    29   3.7  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    29   4.9  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    28   6.5  
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    28   8.6  

>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 553 MLTKAFKLKLLEVENQCNIELLRVKQSLQCLEPLQMIA 666
           ++++ F+LK L++ +   +EL    + LQCLE L++ A
Sbjct: 636 IISQLFRLKYLKITSDVTLELQTKTRGLQCLETLKIDA 673


>11_05_0035 -
           18509505-18509615,18509840-18509950,18510318-18510377,
           18510459-18510576,18510711-18510811,18510891-18510962,
           18511069-18511156,18511423-18511557,18511655-18511767,
           18511980-18512051,18512154-18512258,18512371-18512484,
           18512587-18512681,18513539-18513686
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 391 ELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQTEKKNAIRKQMLTKAF 570
           E++ LEL+   Y   I  K N+ +  +E     Q  Q+ LN+     ++ + K++LT+ F
Sbjct: 105 EIETLELNFLTYMFQIMEKSNFKLLSDEEYDVAQSGQYLLNLPIKVDESKVDKKLLTRYF 164

Query: 571 K 573
           K
Sbjct: 165 K 165


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 328 PAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMN 453
           PAHF ++S N PTF+ +S+NQ + ++E + S+    ID   N
Sbjct: 25  PAHFAALSFNYPTFA-SSHNQYI-EIEGNASVSVGYIDISAN 64


>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
            16547322-16547469,16550080-16550148,16550348-16550509,
            16550625-16550785,16551240-16551324,16552068-16552144,
            16552234-16552441,16555844-16555921,16556463-16556591,
            16556665-16556808,16556893-16557038,16557137-16557293,
            16557391-16557449,16557582-16557741,16557849-16557998,
            16558093-16558229,16558325-16558471,16558556-16558657,
            16558742-16558799,16558895-16558996,16559729-16559766,
            16559868-16559994,16560075-16560245,16560334-16560465,
            16560577-16560686,16560866-16560926,16561031-16561208,
            16561293-16561498,16561590-16561709,16561903-16562001,
            16562152-16562370,16562701-16562840,16563175-16563286,
            16563375-16563425,16563509-16563589,16563683-16563853,
            16563934-16564089,16564174-16564380,16565145-16565215,
            16565315-16565414,16565783-16565839,16566156-16566212,
            16566308-16566388,16566467-16566606,16566641-16566764
          Length = 2041

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
 Frame = +1

Query: 211  IDDSEVKLKERIAQCRDIIESXXXXXXXXXXXQNALKVSPAHFESISNNSPTFSLTSNNQ 390
            +D++  KL +     R I E+           Q+  KV     E     +   SL S  Q
Sbjct: 1478 LDETSAKLVKEREVARAIEEAPPVVQQTEVLVQDTEKVDSLTAEVEELKT---SLQSEKQ 1534

Query: 391  ELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTL--NIAQTEKKNAIRKQMLTK 564
              DDLE  +S      + K       +   +Q Q Y   L   +A  E +N + +Q    
Sbjct: 1535 RADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVS 1594

Query: 565  AFKLKLL 585
                K+L
Sbjct: 1595 MAPSKIL 1601


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 127 KLDEKYHDNKMNAKDHNNECGNDVTPQL 210
           K +E YH+ ++NAK  ++E GN+ TPQL
Sbjct: 106 KNEEIYHE-QVNAKASHSEHGNNDTPQL 132


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
 Frame = +1

Query: 337 FESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDN----KMNYGVNINEYEKQLQRYQH 504
           F+ ++    TFS   +  ++ DL+    +YS C  N    K++ G+ +  Y+K       
Sbjct: 341 FDDVNGKVLTFSAQDSTYKVFDLKNYNFLYSICDKNIQEIKISPGIMLVIYQKSANHV-- 398

Query: 505 TLNIAQTEKKNAIR--KQMLTKAFKLKLLEVENQCNIELLRVKQSLQCLE 648
            L I   E    ++   Q+L ++ K+  +E  N+  + + + K++LQ ++
Sbjct: 399 PLKILSIEDGTPLKTFTQLLHRSRKVDFIEQFNE-KLLVKQDKENLQIID 447


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +1

Query: 370 SLTSNNQELDDL--ELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQTEKKNAI 543
           +L S+N +L +L   L + +     DN M  G+ +NE+ ++++R+Q  +    T+ ++ +
Sbjct: 139 TLRSDNSKLKNLAYSLKERVDELEKDNFM-LGLKMNEFAQEMERFQMQVGSTNTQMQDNL 197

Query: 544 RKQMLTKAFKLK 579
               + KAF+ K
Sbjct: 198 --DDMAKAFESK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,797
Number of Sequences: 37544
Number of extensions: 225832
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)