Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e11
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    26   0.41 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.3  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   3.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   3.9  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 442 NKMNYGVNINEYEKQLQRYQHTLNIAQ 522
           N  NY  N N Y K+L    + +NI Q
Sbjct: 325 NNNNYKYNYNNYNKKLYYKNYIINIEQ 351


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 424 YSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQ 522
           Y    +NK NY  N N Y K+L    + +NI Q
Sbjct: 96  YKYNYNNKYNY--NNNNYNKKLYYKNYIINIEQ 126


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 397 DDLELSKSIYSTCIDN 444
           DD++L K I + CI+N
Sbjct: 103 DDIQLVKGIANECIEN 118


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 397 DDLELSKSIYSTCIDN 444
           DD++L K I + CI+N
Sbjct: 103 DDIQLVKGIANECIEN 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,614
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)