Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13e08
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 30 0.40
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 2.2
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 27 3.8
05_05_0250 + 23609594-23610784 27 5.0
03_04_0041 - 16738380-16738494,16740191-16740345,16740541-167406... 27 5.0
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 26 6.6
04_01_0265 - 3552746-3552966,3553488-3553578 26 6.6
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 26 8.7
09_02_0463 + 9586015-9586233,9586330-9586400,9587026-9587116,958... 26 8.7
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 26 8.7
06_03_0579 + 22477171-22477359,22477486-22477767,22477774-224779... 26 8.7
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 26 8.7
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +3
Query: 90 LMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 269
L AEAK +++T ESL K++E + + +L R E +K + ++++L + A+
Sbjct: 133 LRAEAKQLKDTNESLEDKIKELKAEKDEL---RDEKQK-LKVEKETLEQQVKILTATPAY 188
Query: 270 MPTP 281
MP P
Sbjct: 189 MPHP 192
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 108 FVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRC 251
FVR CESL + R A I D+ E A KRK ++ +C
Sbjct: 751 FVRSPCESLRPRTRPA--IVEDMTNETKTAEASTANKRKKAKVEAFQC 796
>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 220 LLQAICFSNSPLYFIKSDLMISASRSFPDRDS-HVSLTNLASAIRAYWASSL 68
LL AIC S + L F L+++A PD + H+ ++ L A R A+ L
Sbjct: 1316 LLAAICSSPAFLRFAPKVLLLAAPSVSPDATTFHILISTLCQAHRPAAAADL 1367
>05_05_0250 + 23609594-23610784
Length = 396
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 181 FIKSDLMISASRSFPDRDSHVSLTNLASAIRAYW 80
FI+ +MI+A+ S P D H + +AI +YW
Sbjct: 134 FIRDMVMIAATLSSPPEDEHC----IGAAISSYW 163
>03_04_0041 -
16738380-16738494,16740191-16740345,16740541-16740690,
16741090-16741266
Length = 198
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 132 LSGKLREAEIIRSDLMKYRGELEKQIACKR--KSLNIDLDRCARVRAHMPT 278
L G ++ + ++ +G+L ++ C + + + DLDRC V ++PT
Sbjct: 41 LRGVPKDVRSYDVERVRNKGQLSTRVGCGQVHRIIENDLDRCRVVTPNLPT 91
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 94 WLKLSL*EKHVSLYLGNCERPR 159
WL+ + +KH+ L + CE PR
Sbjct: 307 WLRRNYSDKHIILAVNKCESPR 328
>04_01_0265 - 3552746-3552966,3553488-3553578
Length = 103
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 6 NKLVMTRLHARNYDRPNVENCRDEAQYALMAEAKFVRE 119
+KL+ LHA +YD +V + D+ Q + A+ VR+
Sbjct: 5 SKLLYGTLHAESYDWIDVTDPTDQLQELSVRPARLVRD 42
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 220 LLQAICFSNSPLYFIKSDLMISASRSFPDRDS-HVSLTNLASAIRAYWASSL 68
LL AIC S + L F L+++A PD + H+ + L A R A+ L
Sbjct: 1341 LLAAICSSPAFLRFAPKVLLLAAPSVSPDATTFHILTSTLCQAHRPAAAADL 1392
>09_02_0463 +
9586015-9586233,9586330-9586400,9587026-9587116,
9587322-9587331,9587796-9587863,9588695-9588847,
9588931-9589566
Length = 415
Score = 25.8 bits (54), Expect = 8.7
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = -1
Query: 238 SIFKLFLLQAICFSNSPLYFIKSDLMISA---SRSFPDRDSHVSLTN----LASAIRA-Y 83
++ FL CF S YF+ + ++SA + P D+ ++ A+ +RA Y
Sbjct: 273 ALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQRAVVRGGNFWAAGLRALY 332
Query: 82 WASSLQFSTLGRS*FLACSLV 20
A++L G LACS++
Sbjct: 333 LATALLMWVFGPVPMLACSVL 353
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 69 CSFRHWDGHSS 37
C RHWDGH S
Sbjct: 60 CGSRHWDGHRS 70
>06_03_0579 +
22477171-22477359,22477486-22477767,22477774-22477901,
22478088-22478499
Length = 336
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 208 ICFSNSPLYFIKSDLMISASRSFPDRDSHVSLTN 107
I F+ + +K +MI++ ++ R +HV +TN
Sbjct: 69 IIFAKEMIINLKEGMMINSDKTIDRRGAHVRITN 102
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 9 KLVMTRLHA--RNYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAE 158
K +MTR+ + DR N+E E +Y L A+ T SL +L EAE
Sbjct: 620 KSLMTRIRSIKEETDRVNLEIEAAEREYDLNRAAELKYGTLLSLQKQLEEAE 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,446
Number of Sequences: 37544
Number of extensions: 143092
Number of successful extensions: 332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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