Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e08
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.2  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/37 (18%), Positives = 21/37 (56%)
 Frame = +3

Query: 102 AKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIA 212
           A+ +++ CE+    + +  +    + K+ GE+ ++I+
Sbjct: 60  AEGMKKYCETYKNSIYDVSMTFGPVPKFEGEMAEKIS 96


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 129 SLSGKLREAEIIRSDLMKYRGELEKQIACK 218
           +L+ K     + R+  +KY   +   IAC+
Sbjct: 88  ALNHKFSSVTLYRNKTVKYSARMHAIIACQ 117


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 141 KLREAEIIRSDLMKYRGELEKQ 206
           K ++ E+ R    K+RG +EK+
Sbjct: 854 KQKKMELARHAADKWRGAIEKR 875


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,058
Number of Sequences: 438
Number of extensions: 1433
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)