Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13e07
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 108 6e-25
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 66 5e-12
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.56
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 3.9
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 26 3.9
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 3.9
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 26 5.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 6.9
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 9.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.1
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 108 bits (260), Expect = 6e-25
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Frame = +3
Query: 120 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 299
L+ I + + LNE++ SGK VFKPWD R D + VESDAD++LLF +PF G LK
Sbjct: 24 LYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAGAATLKS 83
Query: 300 IKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDG--ILEYCPKIVTFS 470
I V ++ P LF NR ++ FD + ++ + FE +G I E+ K +
Sbjct: 84 ILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQ 143
Query: 471 SVSHLTMHFPKNFGA-ETTKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDH 623
++ +L + F K+ G+ + T+I YIGL+G + P + + YE P DH
Sbjct: 144 NLQNLNIFFTKSDGSDDPTQIAYIGLRGSFVP-FKGDPVVTIYEATPRPSDH 194
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 65.7 bits (153), Expect = 5e-12
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Frame = +3
Query: 132 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKV- 308
I+ LECLN+ + KS F + S F+ESD DE+L+ IPF +K+ I +
Sbjct: 133 IENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVHSIAIT 187
Query: 309 -ASEDTDSHPSKLRLFKNRP-NMTFDDV-MIEPDQVFE-LQKDTDGILEYCP-KIVTFSS 473
+T S P ++L+ N+P N++F+D P QV E + + D P + V F
Sbjct: 188 PVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQR 247
Query: 474 VSHLTMHFPKNFG-AETTKIYYIGLKGE 554
V+ L + N G ETTKI + L GE
Sbjct: 248 VNSLVIFIYSNVGEEETTKISRLELFGE 275
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 29.1 bits (62), Expect = 0.56
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 306 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 479
+AS DTDSH S L K RP N+ ++D ++ D + + D +Y I TF+ +
Sbjct: 21 LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDDTWRSKRWEFD--YQY-SGISTFAHLP 77
Query: 480 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHG 578
H+ + +E I IG+ + SHR G
Sbjct: 78 HVRCLVEQ---SEDFDIAIIGVPFDTAVSHRPG 107
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 561 VSILLLIQCNKFLLFLPQSSLE-SALLDVILKK 466
V LLL C +FLL P++ L+ + L+ I KK
Sbjct: 578 VLALLLESCGRFLLRYPETKLQMQSFLEAIQKK 610
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 486 TMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMP 608
T+ PK+ GA +Y GL E + G+ C YE P
Sbjct: 43 TITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCWYEGNP 83
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 308 NLYSFKFYISSEWYIKQQFFISITFNKFASIQSFVPRF 195
NLY F + + W+ ++ I+IT + F +F+P F
Sbjct: 204 NLYEFSYQLEEGWFSRRCSKINITGSVF---DNFIPSF 238
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 147 LECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGN 284
L+ NE LE G S F + R+ SKF + D F GN
Sbjct: 167 LDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGN 212
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 165 IRSNIPSGPNQSFHEDCIVYQYLQHYRDHGHGYNDDETF 49
IR N N + D Y Y+QH R+ G N+D T+
Sbjct: 63 IRPNEGEAANYGIYFDDTEYDYMQHLRNIG---NEDATW 98
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 FNKFASIQSFVPRFKNTFTRTLKGFVQTFQ 147
FN +SF+P KNTFT +K F+
Sbjct: 102 FNDPTQPESFLPPPKNTFTSRIKKIKNLFK 131
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -1
Query: 343 NFDGCESVSSDAT--FIPLSF 287
NFDG E+ S DAT IP+S+
Sbjct: 425 NFDGLENASYDATKPIIPVSY 445
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 240 HFQQICFYPIFCPKV*KHFYPNPQGIRSNIPSGPNQSFHE 121
H++Q Y I+ F NP G+ +N+ SG F+E
Sbjct: 2679 HYKQQVGYQIYKIAGRADFLGNPVGLFNNVASGVFDMFYE 2718
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 183 KSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSH 332
K + + D R R ++ S +E+ F I + + KLK + + S D+H
Sbjct: 212 KEIRQGRDARNYREQYKISSENEKRWFTIIYCADNKLKAMHMISPTLDAH 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,848
Number of Sequences: 5004
Number of extensions: 55930
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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