Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13e07
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15313-11|AAK68622.1| 208|Caenorhabditis elegans Hypothetical p... 174 4e-44
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 52 3e-07
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 52 3e-07
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 52 3e-07
Z73969-11|CAE17696.1| 132|Caenorhabditis elegans Hypothetical p... 28 6.4
Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related... 28 6.4
AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related ... 28 6.4
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical pr... 27 8.4
>L15313-11|AAK68622.1| 208|Caenorhabditis elegans Hypothetical
protein ZK353.9 protein.
Length = 208
Score = 174 bits (424), Expect = 4e-44
Identities = 78/172 (45%), Positives = 118/172 (68%)
Frame = +3
Query: 111 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 290
+Y++ ID++ + LNES++G+GK VFK +KR DR ++VESD D ELLFNIPFTG+++
Sbjct: 25 RYDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKRDDRLEYVESDCDHELLFNIPFTGHVR 84
Query: 291 LKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFS 470
L G+ + ++ SHP+K+RLFK+R M+FDD IE DQ +L++D G+++Y K F
Sbjct: 85 LTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCSIEADQEIDLKQDPQGLVDYPLKASKFG 144
Query: 471 SVSHLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDHK 626
++ +L++ NFG + TKIYYIGL+GE+ R + + +YE L DHK
Sbjct: 145 NIHNLSILVDANFGEDETKIYYIGLRGEFQHEFRQRIAIATYESRAQLKDHK 196
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 52.0 bits (119), Expect = 3e-07
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 111 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 290
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 291 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 458
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 459 VTFSSVSHLTMHFPKNFG 512
V F +V ++ N G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 52.0 bits (119), Expect = 3e-07
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 111 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 290
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 291 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 458
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 459 VTFSSVSHLTMHFPKNFG 512
V F +V ++ N G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 52.0 bits (119), Expect = 3e-07
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 111 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 290
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 291 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 458
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 459 VTFSSVSHLTMHFPKNFG 512
V F +V ++ N G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>Z73969-11|CAE17696.1| 132|Caenorhabditis elegans Hypothetical
protein C12D8.15 protein.
Length = 132
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +3
Query: 183 KSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNR 362
+ V K KRL++ + E +D E+ +P+ ++ + I ++SE+ +L +
Sbjct: 50 EEVGKAIGKRLNQCEKGECYSDVEI--EVPYYSSVNMPQILLSSEEHPPEYYELESARAS 107
Query: 363 PNMTFDDVM 389
P ++DDVM
Sbjct: 108 PLPSYDDVM 116
>Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical
protein C33A12.10 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 302 YSFKFYISSEWY-----IKQQFFISITFNKFASIQSFVPRFKNTFTRTLKGFVQTFQVVQ 138
Y FK Y++S W Q F+ I+ ++F F+ F T + F +
Sbjct: 50 YIFKIYLTSNWKKSEPGKNQHVFLVISLSQFTCFLLFLTDFLMTRLPSTGIFTSFCASIP 109
Query: 137 INLFMKIVLYTNIF 96
N ++KI+L + ++
Sbjct: 110 PNHYLKIILVSALY 123
>AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
b protein.
Length = 548
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +3
Query: 108 IQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNI 287
I NL E +D N S ++ + + K LD K E + F+ +
Sbjct: 141 INGNLAENLDFKQETTENPSGSDDFQAENEKYLKSLDFEKIQEMKLEITERFDPKLLEFL 200
Query: 288 KLKGIKVASEDTDSHPSKLRLFK 356
K +G K ASE+T P K+ FK
Sbjct: 201 KNRGNK-ASEETQKKPKKISKFK 222
>AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
a protein.
Length = 660
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +3
Query: 108 IQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNI 287
I NL E +D N S ++ + + K LD K E + F+ +
Sbjct: 141 INGNLAENLDFKQETTENPSGSDDFQAENEKYLKSLDFEKIQEMKLEITERFDPKLLEFL 200
Query: 288 KLKGIKVASEDTDSHPSKLRLFK 356
K +G K ASE+T P K+ FK
Sbjct: 201 KNRGNK-ASEETQKKPKKISKFK 222
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 282 NIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQ--KDTDGILEYCPK 455
N+K +V + SH S ++F+N+ F M DQ+++++ K +L
Sbjct: 367 NLKSIVSQVGGSEYTSHVSLNKMFENKIVEMFHATMFSMDQIYQIETLKTKREVLTEGMY 426
Query: 456 IVTFSSVSH 482
+ FS++ H
Sbjct: 427 FLIFSNLKH 435
>Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical
protein B0035.6 protein.
Length = 727
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 494 LSKELWGRNNKNLLHWIK 547
L ++LW N KN+ HW +
Sbjct: 676 LHRDLWAENEKNMEHWTR 693
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,334
Number of Sequences: 27780
Number of extensions: 301682
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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