Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13e06
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 41 2e-04
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 40 3e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 40 5e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 0.002
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 37 0.002
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 35 0.013
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 34 0.022
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 32 0.068
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 31 0.16
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.48
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.64
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 29 0.84
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 2.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 2.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.4
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 3.4
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 4.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 4.5
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 7.9
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 7.9
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.9
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 40.7 bits (91), Expect = 2e-04
Identities = 33/125 (26%), Positives = 52/125 (41%)
Frame = +3
Query: 186 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 365
+++ILM+G +GKT I + + E PT G + E NI++T +
Sbjct: 17 EMRILMVGLDAAGKTTILY----KLKLGEIVTTIPTIGFNVETVEYRNISFT-------V 65
Query: 366 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVF 545
WD G + W +G+I V SN E E L +++ +L +VF
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQR-MLNEDELRDALLLVF 124
Query: 546 YNCVD 560
N D
Sbjct: 125 ANKQD 129
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/92 (30%), Positives = 44/92 (47%)
Frame = +3
Query: 189 LKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 368
LK++++G S GKT I N +N + + K T G +F + + V ++LW
Sbjct: 9 LKVIILGESGVGKTSIMN---QYVNRKFSKDYKATIG---ADFLTKEVLVDDKVVTLQLW 62
Query: 369 DCSGDHRFESCWPALRFGVKGVILVCSSNTSE 464
D +G RF+S A G +LV N S+
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSK 94
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 192 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 368
K ++IG S GK+ + F N NI+ K T G VEF NI + + ++W
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIES----KSTIG---VEFATRNIVLDNKKIKAQIW 64
Query: 369 DCSGDHRFESCWPALRFGVKGVILV 443
D +G R+ + A G G ++V
Sbjct: 65 DTAGQERYRAITSAYYRGAVGALIV 89
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = +3
Query: 189 LKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 368
LK++++G S GKT + N +N + K T G +F ++ + V ++LW
Sbjct: 9 LKVVILGDSGVGKTCLMN---QFVNQKFSREYKATIG---ADFLTKDVVVDDKLVTLQLW 62
Query: 369 DCSGDHRFESCWPALRFGVKGVILVCSSNTSE 464
D +G RF+S A G ++V + N S+
Sbjct: 63 DTAGQERFQSLGMAFYRGADCCVIVYNVNNSK 94
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +3
Query: 186 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 365
+++ILM+G +GKT I + ++++ PT G F + Y +N+ +
Sbjct: 21 EMRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVG-----FNVETVTY--KNIKFNV 69
Query: 366 WDCSGDHRFESCWPALRFGVKGVILVC-SSNTSEVAPRELEL 488
WD G + W G KG+I V S++++ ++ EL
Sbjct: 70 WDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQEL 111
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 34.7 bits (76), Expect = 0.013
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 192 KILMIGPSESGKTQIANFL-SNSINIDEAGNPKPTQGL-RIVEFEQSNINYTGRNVDIEL 365
K+L++G S SGK+ + + + SN + K T+ L ++ E S++ + G N+ + L
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYV-------AKDTRRLGATIDIEHSHVRFLG-NLVLNL 55
Query: 366 WDCSGDHRF 392
WDC G F
Sbjct: 56 WDCGGQEAF 64
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 309 VEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 443
V+F+ G+ V +++WD +G RF + + G G+I+V
Sbjct: 43 VDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 32.3 bits (70), Expect = 0.068
Identities = 25/107 (23%), Positives = 49/107 (45%)
Frame = +3
Query: 192 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWD 371
K++++G GKT + S E P + E +++ GR++++ LWD
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKG-TFPEVYVPT------VFENYVADVEVDGRHIELALWD 60
Query: 372 CSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQ 512
+G ++ P L + V+L+C S AP L+ + ++S+
Sbjct: 61 TAGQEDYDRLRP-LSYPDSHVVLICFSVD---APESLDNVQEKWISE 103
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 192 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWD 371
K++++G GKT + S E P + E +++ GR+V++ LWD
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKG-TFPEVYVPT------VFENYVADVEVDGRHVELALWD 60
Query: 372 CSGDHRFESCWPALRFGVKGVILVC 446
+G ++ P L + VIL+C
Sbjct: 61 TAGQEDYDRLRP-LSYPDSHVILIC 84
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 29.5 bits (63), Expect = 0.48
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +3
Query: 177 QPNKLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSN-INYTGRNV 353
QP K ++IGP+ SGKT +A +S + + I + Q + +N R
Sbjct: 11 QPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDLHPKANIEKMSQGHPLNDNDRWG 70
Query: 354 DIELWDCSGDHRFESCWPAL-RFGVKGVILVCSS 452
L +C G +C L + +KGV+L CS+
Sbjct: 71 --WLHNCGG-----ACAMELDKESIKGVVLTCSA 97
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 240 NFLSNSINIDEAGNPKPTQGLRIVEFEQSNI 332
NF+S N+D G+P +G ++ +E+S I
Sbjct: 31 NFVSEPTNLDHLGSPFVEKGKSVIPYEKSQI 61
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 165 KIIMQPNKLKILMIGPSESGKTQIANFLSNSINIDEAG 278
K+I + + ++++GPS SGK+ + N L ++ +D G
Sbjct: 25 KLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKG 62
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 366 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVF 545
WD ++ F+ C + + KG+ + NT +AP + LY + + KQC
Sbjct: 286 WDPQCEY-FDDC-NSDQTAFKGIFMQSFGNTIRLAPYTYDTLYPLIQTSAAAAAKQCCGG 343
Query: 546 YN 551
Y+
Sbjct: 344 YS 345
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 195 ILMIGPSESGKTQIANFLSNSINI 266
+L+ GP GKT +AN L+N + +
Sbjct: 211 VLLHGPPGCGKTMLANALANELGV 234
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 186 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQ 323
K ++ ++GP+ +GKT + + + G+ GLR+ F Q
Sbjct: 620 KSRVALVGPNGAGKTTLIKLILEKVQ-PSTGSVVRHHGLRLALFNQ 664
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 195 ILMIGPSESGKTQIANFLSNSINID 269
ILM GP +GKT IA ++ S+ D
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSLGSD 92
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 168 IIMQPNKLKILMIGPSESGKTQIANFLSNSINIDEAGNPKP 290
I+ NKL I+ IGP+ SGK+ + + L +++++ P
Sbjct: 636 IVFPRNKLSIV-IGPTGSGKSSLISALLGELSLNKGSYNLP 675
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 189 LKILMIGPSESGKTQIANFLSN 254
+ + ++GPS +GK+ + N L+N
Sbjct: 240 INVAILGPSNAGKSSLINLLAN 261
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 207 GPSESGKTQIANFLSNSINI 266
GPS SGKT +A + ++N+
Sbjct: 28 GPSGSGKTSVAQLIVKALNL 47
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 183 NKLKILMIGPSESGKTQI 236
N +K+L++G +SGKT I
Sbjct: 73 NDIKVLLLGAGDSGKTTI 90
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 126 VFSLHCILLLYSYNYVEKLISSFFLEIPIVY 34
VF +C+ L N ++ L+S FLE ++Y
Sbjct: 414 VFRTNCLDCLDRTNVIQNLVSRVFLEQVMIY 444
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +3
Query: 96 KAKEYSEVKIQHSIYLS*ATTY*K---IIMQPN-KLKILMIGPSESGKTQIANFLSNSIN 263
K K+ + +K+QH + T+ + I Q + +I +IGP+ +GK+ + L+ +
Sbjct: 666 KTKQRAIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGEL- 724
Query: 264 IDEAGNPKPTQGLRIVEFEQSNINYTGRNVD 356
+ G + RI Q+ + G + D
Sbjct: 725 LPTVGEIYQHENCRIAYVAQAAFTHLGHHPD 755
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 132 YVVFSLHCILLLYSYNYVEKLISS--FFLEIPIVYCICLSFIPSVT 1
+ + S+ C+L+L Y Y IS+ +++++ + C+ L ++T
Sbjct: 311 FTIESIQCLLILSIYRYCRTEISAAWYYMKLGLNCCLRLGLHRNIT 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,451
Number of Sequences: 5004
Number of extensions: 51688
Number of successful extensions: 179
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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