Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13e02
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 34 0.015
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 31 0.10
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 29 0.55
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 0.97
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 0.97
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 1.3
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 3.9
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 5.2
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 25 6.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 6.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 6.8
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 6.8
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 9.0
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 9.0
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 9.0
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 369 NTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYH 485
N KT +P G +S F CP CSK FK +HI+ H
Sbjct: 409 NRKTSVPRSPGGKS-FVCPECSKKFKRSEHLRRHIRSLH 446
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 31.5 bits (68), Expect = 0.10
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 452 LLGLETHPEISLH*REREPCFTNIERYNQASSY 550
L +E HP++S+H + PC T I R++Q S+
Sbjct: 373 LYEIENHPQVSVH-MDVYPCMTGITRFSQLPSW 404
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 29.1 bits (62), Expect = 0.55
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 213 KKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPS 392
KKR+ R K ++++ + H ++ V K E+ K+ + + N +
Sbjct: 317 KKRVWSREK-RLLSEMAITNHSPLLNV-DDYRKFREDLWKKRHGKRKVYQCSNCSQTFIN 374
Query: 393 EDGKQSEFECPVCSKIFKVYSWAW 464
ED + S CP C + K++S W
Sbjct: 375 EDIQNSSAFCPKCIRHSKLFSLPW 398
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.3 bits (60), Expect = 0.97
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 537 KPVRIERCIACNVLIKSDDHTC 602
KP R + C CN+ ++ DH C
Sbjct: 167 KPARSKHCRLCNICVEKFDHHC 188
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 28.3 bits (60), Expect = 0.97
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 231 RPKTEVIAKR--KLIP-HKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 401
RP +E+I R P H+ + N N S + SQ HNL P S
Sbjct: 208 RPPSELINSRISDFFPDHQPKLLEKTISNSLRRNLSIRTSQGHNLGNFGQEILPRSSRRA 267
Query: 402 KQSEFECPVCS 434
+ SE CP+ S
Sbjct: 268 RPSELVCPLSS 278
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 300 KMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 401
++NK EN T+ NLL+K+ T +P PS +G
Sbjct: 169 EINKIPENIVTQSLSYTNLLKKFET-SPNPSNNG 201
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 297 HKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSK-IFKVYSWAWKHI 473
+K ++ S N+ KK P +TKT + + + ECP+C++ + + ++ H
Sbjct: 51 YKKSRISSNSENKKQIP-------DTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHT 103
Query: 474 QKYHCI 491
Y C+
Sbjct: 104 YCYECL 109
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 280 FLWGISFLLAITSVLGRYAILFFSGWATAWCERNA 176
FL + AI +LG +F SG+ T WC +NA
Sbjct: 388 FLTYLDLRQAIGLILGVLHTVF-SGYTTVWCPQNA 421
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 472 MCFQAQE*TLNILEQTGHSNSDCFPSSLGIGVLVLYFLNKLCG 344
+CF A++ T++ TG N + +G+ +F+ K CG
Sbjct: 1939 ICFNARQNTVSSRRLTGECNKHAATCTGSVGI---FFITKACG 1978
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 309 KTSENASTKKS--QPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKI 440
K S+ AS+ +S PH +L + PS+ + + EC CSKI
Sbjct: 115 KESQLASSAESIYNPH-ILNTFCLGKTAPSDKNRYTTTECLACSKI 159
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 274 WGISFLLAITSVLGRYAILFFSGWATAWCERNACTFLNPRAQVSHLHVNR 125
WG + L S++ + +G N T L P+A V H+ V+R
Sbjct: 273 WGQASTLGAESIINWSDCIICAGTTFTDYSSNGWTSLPPKANVLHVDVDR 322
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 60 DLIETNAEHKMGSKIPGKLRSQRLTCKCDTCALGFKNVQALRSHQAVAH-PLK 215
D++ + E +M + G L + RL C+ C F N + + H +H P K
Sbjct: 1041 DMVLPSEEFEM--HLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHLQHSHLPFK 1091
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 6.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +3
Query: 138 KCDTCALGFKNVQALRSHQAVAH 206
+C+ C+ +KN+ L+ H+ +H
Sbjct: 400 RCEVCSKRYKNLNGLKYHRTHSH 422
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 471 IQKYHCIDEKGNPVLPTSKDIIK 539
I K+ D+ G PVLP D+IK
Sbjct: 190 IAKHFIRDKSGQPVLPIITDLIK 212
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 333 KKSQPHNLLRKYNTKTPIPSEDGKQSEF 416
K+++ ++ Y+ +TP+P E+ + +EF
Sbjct: 173 KRARAFDMKIVYHNRTPLPEEEAEGAEF 200
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 351 NLLRKYNTKTPIPSEDGKQSEFECPVCSKIFK 446
+LL Y +K P PSE E + + SKI K
Sbjct: 277 SLLAAYGSKVPKPSETHTDPEKDKKIFSKICK 308
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +3
Query: 477 KYHCIDEKGNPVLPTSKDIIKPVRIER 557
KYH + N + SK + P++++R
Sbjct: 58 KYHLLKFHSNKAIDPSKSFVPPIKMQR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,686
Number of Sequences: 5004
Number of extensions: 62920
Number of successful extensions: 205
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -