Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13e01
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 485 LYVMNITDIDDKIIKRAXQKYLYEKYLKEPRNLND 589
           ++V +I+ IDD  ++ + Q    E++L E    ND
Sbjct: 65  IFVRSISKIDDVTMEYSVQLTFREQWLDERLRFND 99


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 176
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 176
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 176
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 255 LLLDIFNC*NY*KNVIFLLKSNVKFNVTLLDKSIYFY 145
           LLLD+FNC    + +  L  +NV  +      S Y Y
Sbjct: 607 LLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSYYSY 643


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 497 NITDIDDKIIKRAXQKYLYEKYLKEPRNLN 586
           NI  I+ +I K      L+ ++LK PR  N
Sbjct: 167 NIAVIEYRIPKSGKGFSLFARFLKNPRPCN 196


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +2

Query: 512 DDKIIKRAXQKYLYEKYLKEPRNLNDTVDDAVNVINYYEE 631
           + KII      Y Y  Y     N N+        INY E+
Sbjct: 78  EPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQ 117


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 473  GYDILYVMNITDIDDKIIKRAXQKYLYEKYL 565
            GY I Y     D D   I    QKY  E  L
Sbjct: 1398 GYTIHYKPEFGDWDTAQISSTVQKYTLENLL 1428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,360
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)