Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d24
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 93 8e-21
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 93 8e-21
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 1.4
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 1.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 24 3.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 4.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 5.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.9
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 23 9.9
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 23 9.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 23 9.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 92.7 bits (220), Expect = 8e-21
Identities = 41/89 (46%), Positives = 61/89 (68%)
Frame = +2
Query: 2 ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
+L TVWAEH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVV
Sbjct: 101 SLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVV 158
Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
RV+AHTQ++ QKKAH+MEIQ+NGG+
Sbjct: 159 RVLAHTQIRKTPLAQKKAHLMEIQVNGGS 187
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 92.7 bits (220), Expect = 8e-21
Identities = 41/89 (46%), Positives = 61/89 (68%)
Frame = +2
Query: 2 ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
+L TVWAEH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVV
Sbjct: 101 SLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVV 158
Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
RV+AHTQ++ QKKAH+MEIQ+NGG+
Sbjct: 159 RVLAHTQIRKTPLAQKKAHLMEIQVNGGS 187
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 1.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 133 FASKLILPFLTGFSESLLLAFVPVFVEATST 41
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 1.9
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 55 LQKLVQMQEEGFH*SQ*EMAG*AWTQINRKRFQEDDPLL*CC-KSHCPHSNEAVKTATKE 231
L KL+Q+ + M+ + I+ K+F+E D L CC +SH ++ ++
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQ 343
Query: 232 GSHYGN 249
+ +GN
Sbjct: 344 SNDFGN 349
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 93 LKPVRNGRMSLDANQ*KKISRR 158
L+PVRNG +D K IS+R
Sbjct: 145 LRPVRNGVRPMDLEAMKHISKR 166
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 137 IEKDFKKMIRYCSVVRVIAHTQ 202
++K+F+KM C+++RV A T+
Sbjct: 623 LKKEFEKMPLGCNILRVDAQTK 644
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 267 VPPLSWISIM*AFFCRCFNSFI*VW 193
V ++W I+ +FF C N F+ V+
Sbjct: 309 VSDMNWAYIIASFFRTCLNDFVSVF 333
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 22.6 bits (46), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 148 IFFY*FASKLILPFLTGFSESLLLA--FVPVFVEATSTVFR 32
+FF+ + L FL S L LA F+P+ + ST+ R
Sbjct: 156 LFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSR 196
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 22.6 bits (46), Expect = 9.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 170 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 262
C+VV + T M+ QRQ K I + LNG
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNG 461
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 22.6 bits (46), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 130 QINRKRFQEDDPLL*CCKSHCP 195
+IN K E++ +L CKSH P
Sbjct: 27 EINLKELLEENGVLDECKSHNP 48
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 137 IEKDFKKMIRYCSVVRVIAHT 199
+EK+ KK I C + +V HT
Sbjct: 1228 VEKNSKKSIFSCEITKVEFHT 1248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,992
Number of Sequences: 5004
Number of extensions: 16223
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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