Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d24
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    98   1e-21
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    97   2e-21
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   0.13 
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    27   2.7  
07_03_0633 + 20120560-20123464,20123608-20123672                       26   4.7  
05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    25   8.3  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           +L +VWA+H+SE+ RRRFYKNW              +  + G+K I+   +KM +Y S+V
Sbjct: 101 SLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIV 160

Query: 182 RVIAHTQMKLLK-QRQKKAHIMEIQLNGGT 268
           RVIAHTQ++ +K  +QKKAH+MEIQ+NGGT
Sbjct: 161 RVIAHTQIRKMKGLKQKKAHLMEIQINGGT 190


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           +L +VWA+H+SE+ RRRFYKNW              +  + G+K I+   +KM +Y SVV
Sbjct: 101 SLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVV 160

Query: 182 RVIAHTQMKLLK-QRQKKAHIMEIQLNGGT 268
           RVI HTQ++ +K  +QKKAH+MEIQ+NGGT
Sbjct: 161 RVIVHTQIRKMKGLKQKKAHLMEIQINGGT 190


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 136 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 252
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 181 YNTTVADHLLEIFFY*FASKLILPFLTGFSE 89
           Y T +  H+  I+ Y FAS ++  ++ G  E
Sbjct: 246 YTTVIGSHISTIYHYGFASLMMRRYIDGIRE 276


>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 128 RKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEI 250
           R S+E   KK+++    + ++A    +LL+QR  KAH  +I
Sbjct: 337 RASLESIGKKVLQNLHGLPLLAEAIGRLLRQRLDKAHWQKI 377


>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 157 LLEIFFY*FASKLILPFLTGFSESLLLAFVPVFV 56
           LLE++   FAS  ++    GF  SLL  F+  F+
Sbjct: 22  LLEMYRGRFASSELMTIAGGFVSSLLFLFLLTFI 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,967,498
Number of Sequences: 37544
Number of extensions: 105623
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)