Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d24
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   122   5e-29
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   122   5e-29
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   122   5e-29
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   122   5e-29
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    87   1e-18
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    87   1e-18
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...    87   2e-18
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...    87   2e-18
Z81127-1|CAB03386.1|  325|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AY728060-1|AAU43721.1|  277|Caenorhabditis elegans cadmium-induc...    26   4.2  
AF301606-1|AAG30870.1|  277|Caenorhabditis elegans cadmium-induc...    26   4.2  
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA hai...    25   7.3  
AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone stem-...    25   7.3  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    25   9.7  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  122 bits (293), Expect = 5e-29
 Identities = 53/89 (59%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 161 RVIAHTQMKILRRRQKKAHLVEIQVNGGT 189


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  122 bits (293), Expect = 5e-29
 Identities = 53/89 (59%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 161 RVIAHTQMKILRRRQKKAHLVEIQVNGGT 189


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  122 bits (293), Expect = 5e-29
 Identities = 53/89 (59%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 161 RVIAHTQMKILRRRQKKAHLVEIQVNGGT 189


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  122 bits (293), Expect = 5e-29
 Identities = 53/89 (59%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 161 RVIAHTQMKILRRRQKKAHLVEIQVNGGT 189


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 37/53 (69%), Positives = 47/53 (88%)
 Frame = +2

Query: 110 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGT 91


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 37/53 (69%), Positives = 47/53 (88%)
 Frame = +2

Query: 110 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGT 268
           WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGT
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGT 91


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 38/68 (55%), Positives = 45/68 (66%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQM 205
           RVIAHTQM
Sbjct: 161 RVIAHTQM 168


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 38/68 (55%), Positives = 45/68 (66%)
 Frame = +2

Query: 2   ALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV 181
           AL T+WAEH+SE+ RRRFY NW              WQDE G+K IE DF K+ +YCS +
Sbjct: 101 ALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSI 160

Query: 182 RVIAHTQM 205
           RVIAHTQM
Sbjct: 161 RVIAHTQM 168


>Z81127-1|CAB03386.1|  325|Caenorhabditis elegans Hypothetical
           protein T22G5.1 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 181 YNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVFR 32
           Y T +A  ++  FFY   + L L F T     LLLAF+P+ +     +FR
Sbjct: 3   YLTFLAWVIIAAFFY-LLTLLALKFKTIRLLILLLAFLPIAIMLAFFIFR 51


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 170 CSVVRVIAHTQMKLLKQRQKKAHIMEIQ 253
           C++  VI++ +MK+L+ +QK   +   +
Sbjct: 218 CTITNVISYRKMKVLRNKQKSKKLQRAE 245


>Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical
           protein F35E8.11 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 IEKDFKKMIRYCSVVR 184
           +EKDF K++ YC  VR
Sbjct: 252 LEKDFPKLLEYCERVR 267


>Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.12 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 IEKDFKKMIRYCSVVR 184
           +EKDF K++ YC  VR
Sbjct: 252 LEKDFPKILEYCESVR 267


>AY728060-1|AAU43721.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-6 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 IEKDFKKMIRYCSVVR 184
           +EKDF K++ YC  VR
Sbjct: 252 LEKDFPKILEYCESVR 267


>AF301606-1|AAG30870.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-1 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 137 IEKDFKKMIRYCSVVR 184
           +EKDF K++ YC  VR
Sbjct: 252 LEKDFPKLLEYCERVR 267


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
          protein F13H10.3b protein.
          Length = 617

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 67 PVFVEATSTVFRHMLR--PDSQQS 2
          P F E T +VFRH  R  PD + S
Sbjct: 3  PFFAEFTESVFRHFRRNEPDEENS 26


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
          protein F13H10.3a protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 67 PVFVEATSTVFRHMLR--PDSQQS 2
          P F E T +VFRH  R  PD + S
Sbjct: 3  PFFAEFTESVFRHFRRNEPDEENS 26


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 110 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 253
           W++E+G + +E D K      +V R +   ++       KK + MEIQ
Sbjct: 144 WKEEIGEEQVELDTKAEELEAAVQRELELERIDEQMAALKKLNDMEIQ 191


>Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical
           protein R06F6.1 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 89  KPSSCICTSFCRSDVDSL 36
           +PS  + TSFC SD D+L
Sbjct: 278 EPSDSVNTSFCYSDSDAL 295


>Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA
           hairpin-binding protein protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 89  KPSSCICTSFCRSDVDSL 36
           +PS  + TSFC SD D+L
Sbjct: 278 EPSDSVNTSFCYSDSDAL 295


>AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone
           stem-loop binding proteinCDL-1 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 89  KPSSCICTSFCRSDVDSL 36
           +PS  + TSFC SD D+L
Sbjct: 278 EPSDSVNTSFCYSDSDAL 295


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 178 CKSHCP-HSNEAVKTATKEGSHYGN 249
           C S+ P  SN++ K +T+E SH  N
Sbjct: 895 CNSYQPMSSNQSYKPSTEESSHTSN 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,883,560
Number of Sequences: 27780
Number of extensions: 92905
Number of successful extensions: 238
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)