Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d23
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    28   1.6  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    27   2.8  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.9  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   6.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.4  

>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 315 EHSINTEENMSTADRNSESSRLVTSNASTKPSYLNLCSNA 434
           +H+I T    +T  ++ +   LV S ++T P+Y+++  ++
Sbjct: 110 QHTILTPRLSATEGKDDDEDELVISTSNTAPTYISMIESS 149


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 588 WMPIRLRSARHWLLQVVGFIFITAGFFVI 674
           W     R + HW++ +VG +F  +G F++
Sbjct: 415 WFGWTGRESVHWIVPIVGTLFYASGSFLL 443


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 330 TEENMSTADRNSESSRLVTSNASTKPSYLNLCSN 431
           +EEN      N  S+   ++N S  P+ +N+CSN
Sbjct: 206 SEENEDGVTDNDSSNVNSSTNESPNPTDINVCSN 239


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 327 NTEENMSTADRNSESSRLVTSNASTKP 407
           NTE+++   D+N E+ + + SN S +P
Sbjct: 54  NTEKSIEINDKNLEAEKDIESNLSLRP 80


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 618 HWLLQVVGFIFITAGFFVI 674
           HW+   +G   + AGFFVI
Sbjct: 394 HWIAPFIGISMMGAGFFVI 412


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 88   LYDICHLCD*DFITEPELCQFNKC 159
            L+DIC  C     ++P LC+ N C
Sbjct: 1428 LFDICRGCSKLSSSDPVLCKSNSC 1451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,384
Number of Sequences: 5004
Number of extensions: 68066
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)