Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d23
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1736 + 39556376-39556523,39556651-39556745,39556867-395570...    30   2.2  
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   3.9  
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935...    28   6.7  
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207...    28   6.7  
10_08_0556 - 18739091-18739399,18740126-18740325,18740453-187405...    28   8.9  
08_01_0012 - 89798-90514                                               28   8.9  
07_01_0846 + 6873655-6873783,6875175-6875368,6875923-6876007,687...    28   8.9  

>01_06_1736 +
           39556376-39556523,39556651-39556745,39556867-39557059,
           39557468-39557808,39558213-39558443,39558537-39558689
          Length = 386

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 510 ILMSLGWVIIMTSAINAITPGDFATEWMPIRLRSARHWLLQVVGFIFITAGFFV 671
           IL ++G++++   A+ AI   +F++   P RL+    W +   GF++    +FV
Sbjct: 66  ILGNMGFILLGGRALKAIH-AEFSSSHSPARLQ----WFIAATGFVYFAFAYFV 114


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 FNNLCLIVILYWI*FTLFSKTQKNN*SLH-HTWKDWNKNIQLTQKKICLPRTE 360
           F N   +    W  F++ S  Q +  S+H  T  DW + ++    ++C P TE
Sbjct: 661 FVNCAAVSPFQWHPFSITSAPQDDYVSVHIRTLGDWTRELKNVFSRVCRPPTE 713


>12_01_0945 +
           9351915-9351929,9352221-9352386,9352903-9353024,
           9353098-9353214,9356997-9357077,9357204-9357272,
           9357727-9357790,9357988-9358067,9358164-9358247,
           9358418-9358502,9359658-9359743,9359924-9360045,
           9360841-9360901,9360981-9361166,9363622-9363723,
           9363803-9363844,9363949-9364086
          Length = 539

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 336 ENMSTADRNSESSRLVTSNASTKPSYLNLCSNACSVIFLCIISYCSFHKGVT 491
           ++M  A   S    L + ++ T P + +LC ++ S++     +YCS  +G T
Sbjct: 401 QSMRKASPTSMKISLRSVSSQTFPKHTSLCYSSHSILVPSDANYCSIREGRT 452


>03_03_0219 -
           15519076-15520050,15520376-15520579,15520755-15520791,
           15522025-15522104
          Length = 431

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = -1

Query: 655 VMNMKPTTCKSQCRALRRR--IGIHSVAKSPGVIALIAEVIMITHPKDIKMG*KENNVTP 482
           V  + P+   S    LR+R  +  H+V  +  V  L+++  + T P+    G  E NVT 
Sbjct: 192 VTTLVPSVGLSTAETLRKRPLVFFHNVNNTFTVGPLLSKGTLDTVPE--LQGSNETNVTD 249

Query: 481 L*KEQYEIMHKNMTE-HALLHKFK*LGLVEALDVTN 377
           +  +  E MH+N  E  ALL      G ++  ++ N
Sbjct: 250 VGAQNTECMHENTEEIDALLCSDSDEGCLKVQELNN 285


>10_08_0556 -
           18739091-18739399,18740126-18740325,18740453-18740501,
           18741151-18741285
          Length = 230

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 477 HKGVTLFSFHPILMSLGWVIIMTSAI 554
           +KG+ +F+ HP+LM +G++I+ + AI
Sbjct: 39  NKGL-IFNVHPVLMLIGFIILGSEAI 63


>08_01_0012 - 89798-90514
          Length = 238

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 477 HKGVTLFSFHPILMSLGWVIIMTSAI 554
           H    +F+ HP+LM LG V++   AI
Sbjct: 48  HNKQLIFNTHPVLMVLGLVVLAAEAI 73


>07_01_0846 +
           6873655-6873783,6875175-6875368,6875923-6876007,
           6876041-6876241,6876546-6876644,6876938-6876976
          Length = 248

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 501 FHPILMSLGWVIIMTSAINAITPGDFATEWMPIRLRSARHWLLQVVGFIFITAG 662
           F  I++ + W I+ + AI  ITP +   +   + L+ A  W +Q++GF     G
Sbjct: 90  FFAIVLDVAWFILFSHAIWNITPEEKYGQLFVLSLKLAL-W-MQIIGFSMYRLG 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,595
Number of Sequences: 37544
Number of extensions: 372786
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)