Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d23
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 138 AVSVQQVYYNENRIRIITTCLAF 206
           A+++  V YNE++   ITTCL F
Sbjct: 151 ALTIYVVIYNEDKEEFITTCLTF 173


>U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical
           protein F25B4.5 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 168 HCSTLVELTQLGFSYEVLITQMADIIKIFDQYYVPYRRYLLSE 40
           HC T + L      +E  +    D IKI D +   Y  Y+L E
Sbjct: 448 HCPTSLNLALSESGFEESVENFDDAIKILDNFREEYPGYVLLE 490


>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +3

Query: 405 PSYLNLCSNACSVIFLCIISYCSFHKGVTLFSFHPILMSLGWVIIMTSAINAITPGDFAT 584
           PS+LN  ++   +IF+ + SY  FHK     +   ++ S   V +    I  +   D   
Sbjct: 110 PSWLNHITHTYPIIFIILDSY--FHKRTPPKTIASLIFSAALVFVYFMIICYVRFFDGYW 167

Query: 585 EWMPIRLRSARHWLLQ-VVGFIFITAGFFVIL 677
            +  + L +  H+++  ++GF+    GFF+++
Sbjct: 168 LYPILSLFAFEHFVISYIIGFL----GFFMLI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,384
Number of Sequences: 27780
Number of extensions: 385452
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)