Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d21
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    30   0.29 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    29   0.66 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.0  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   2.7  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.7  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.7  
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   6.1  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = +3

Query: 252 VNIDEFEAIYKDDNNYSVIRRMVEVNTSTVQDIMLSTTVKDILSRDENIFVQTKKAQELR 431
           V  D +   Y++   YS++  +V       QD+      + +L+   NIF+   K +   
Sbjct: 47  VTFDRYTMQYQEATQYSIVFVVV------FQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100

Query: 432 KQEQTNGHLPFCFHKIHSNHSANLESEELHKQLSV 536
           +Q      +   F  I +  SA LE+E   K L V
Sbjct: 101 RQVPNEAEVEKLFAPIFNRKSAQLENETDTKSLPV 135


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 405 QTKKAQELRKQEQTNGHLPFCF 470
           +T K    R+Q QTN +LPFCF
Sbjct: 347 KTSKMSARREQFQTNQNLPFCF 368


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 357 STTVKDILSRDENIFVQTKKAQELRKQEQTNGHLPFCFHKIHSNHSANLESEELHKQLSV 536
           ST + D++S   +I     K +      +++ + P       SNHS  L S++LH+ ++ 
Sbjct: 513 STCLSDLISPQLSILSHEDKRENQSVNSESSKYSPRS-----SNHSPTLHSKDLHRDMAT 567

Query: 537 I 539
           +
Sbjct: 568 V 568


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 300 SVIRRMVEVNTS-TVQDIMLSTTVKDILSRDENIFVQTKKAQELRKQEQTNGHLPFCFHK 476
           + IRR +  + + TV+   L+T  + +    +N   +  K   +    Q +G L  CF K
Sbjct: 217 NAIRRFLNQHAALTVEATKLATAFQSLQVNIDNKVDEILK-DNIVSYHQPSGTLSLCFSK 275

Query: 477 IHSNHSANLESEEL 518
                 +NL  EEL
Sbjct: 276 NELKKHSNLTKEEL 289


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -3

Query: 433 FLNSCAFFV-----CTNIFSSLLSMSFTVVDSIISCT 338
           FLNS  +F+     C N+F++LL     ++  I  CT
Sbjct: 207 FLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITHCT 243


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 8/153 (5%)
 Frame = +3

Query: 219  KQTFTEVPEKIVNIDEFEAIYKDDNNYSVIRRMVEVNTSTVQ--DIMLSTTVK--DILSR 386
            +++   + + I   ++  +  K+DN  ++I R +    S  +  D  L T +K  D    
Sbjct: 1256 QESLDSIDDLIEKFEKLSSSEKNDNLSNLIERQIIKYRSLFEWHDGALVTAMKQGDFFLL 1315

Query: 387  DENIFVQTKKAQELRKQEQTNGHLPFCFHKIHSNHSANLESEELHKQLSVIKPGGYYYPK 566
            DE         + L    + +  L    H   SN + +L +++     + + PGG Y  K
Sbjct: 1316 DEISLADDSVLERLNSVLELSRTLTLVEH---SNAAVSLTAKDGFAFFATMNPGGDYGKK 1372

Query: 567  N----CRSRHKVAILVPYRDRETNLAVFVFKIH 653
                  R+R     + P  D E  L +   K+H
Sbjct: 1373 ELSPALRNRFTEIWVPPMVDTEDILKIVEGKLH 1405


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
 Frame = +3

Query: 240  PEKIVNIDEFEAIYKDDNNYSV----IRRMVEVNTSTVQDIMLSTTVKDILSRDENIFVQ 407
            PE   ++D  E+ YK +N  S     +    E N    +  ++         R+  + V 
Sbjct: 788  PESSESLDSHESEYKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVN 847

Query: 408  TKKAQELRKQEQTNGHLPFCFHKIHSNHSANLESEELHKQL 530
              K      Q + N HL    +  H N   +  S + ++QL
Sbjct: 848  FAKLLLSFNQFEDNSHLRMSINSFHINDMLSKSSRDNNRQL 888


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -3

Query: 433 FLNSCAFFV-----CTNIFSSLLSMSFTVVDSIISCT 338
           FLNS  +F+     C N+F++LL     ++  I  CT
Sbjct: 207 FLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITHCT 243


>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 606 YRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQAG 710
           Y+D E   A F+  +HP+L+ ++  + + ++ ++G
Sbjct: 20  YKDGENTGAFFLELLHPYLVFRDACFNVDIVTESG 54


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 57  CLGIYKKRDRTPISLHSXIDSVPQRNEYTNXRW 155
           CLG  +     PIS+ S   S  QRNE+   +W
Sbjct: 11  CLGALQLLADQPISVISNEPSEEQRNEHVLKKW 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,919
Number of Sequences: 5004
Number of extensions: 57915
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)