Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d21
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660...    31   1.2  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    29   2.8  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    29   3.7  
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    28   6.4  
11_01_0109 - 843748-843851,844655-844940,845390-845557,845812-84...    28   8.5  

>02_02_0080 +
           6598427-6598663,6599246-6599391,6599567-6599669,
           6600407-6600593,6600699-6600792,6601290-6601443,
           6601751-6601855,6601937-6602053,6602248-6602361,
           6602891-6603073,6603207-6603486,6603565-6603686,
           6603763-6603860,6603941-6604118,6604439-6604553,
           6604656-6604723,6604825-6604902,6604986-6605060,
           6605156-6605338
          Length = 878

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = +3

Query: 243 EKIVNIDEFEAIYKDDNNYSVIRRMVEVNTSTVQDIMLS 359
           +K+V++    A YKD+  Y+V+ R+++ + S V+ + ++
Sbjct: 588 QKLVSLLHLIAAYKDETEYTVLARVIDTSLSIVEMVAVA 626


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 436 KNKQMDICHFAFTKFTRITARI*NPRNFTNSSLLSNLVDITTQKIVVPGIKWLFW 600
           KN Q D+CHF       +  +  +P N  +    S+  DIT   + +   K  +W
Sbjct: 567 KNVQQDLCHFIHRMCCHVLGKFFDPDNILDEDTSSS--DITMVTLCINQTKSSYW 619


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 237  VPEKIVNIDEFEAIYKDDNNYSVIRRMVEVNTSTVQDIMLSTTV 368
            VPE +  +   E IY D+N ++        N S ++D+ LST +
Sbjct: 1692 VPEWVGTLANLEGIYLDNNKFTGFLPSSISNISNLEDLRLSTNL 1735


>06_02_0200 -
           12946139-12946282,12947636-12947842,12949506-12949629,
           12950167-12950369,12950922-12951620,12951723-12951784,
           12952395-12952404,12954905-12957631
          Length = 1391

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -1

Query: 531 RAVCEVPRILNSRCDSS--EFCES 466
           +AVCE+P I++ R D S  +FC+S
Sbjct: 341 KAVCEIPDIVSERGDGSLVQFCQS 364


>11_01_0109 -
           843748-843851,844655-844940,845390-845557,845812-846006,
           846195-846320,846427-846589,847363-847388
          Length = 355

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 381 SRDENIFVQTKKAQELRKQEQTNGHLP-FCFHKIHSNHSANLESE 512
           ++  NI  +TKK Q  RKQ  +N ++P   F  +   + +N ++E
Sbjct: 113 NKTSNIIEETKKIQIRRKQANSNSYVPNLAFDTLRPPNLSNDQAE 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,844
Number of Sequences: 37544
Number of extensions: 306408
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)