Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d21
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 72 5e-13
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 72 5e-13
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 72 5e-13
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 69 3e-12
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 69 3e-12
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 40 0.002
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 40 0.002
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 29 4.4
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 28 5.8
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 28 5.8
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 71.7 bits (168), Expect = 5e-13
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 546 GGYYYPKNCRSRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQAGN 713
GG+ PK+C +RH+VAI+VPYRDRE +L + + +H L +Q L+Y IF++EQ N
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVAN 191
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 71.7 bits (168), Expect = 5e-13
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 546 GGYYYPKNCRSRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQAGN 713
GG+ PK+C +RH+VAI+VPYRDRE +L + + +H L +Q L+Y IF++EQ N
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVAN 191
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 71.7 bits (168), Expect = 5e-13
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 546 GGYYYPKNCRSRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQAGN 713
GG+ PK+C +RH+VAI+VPYRDRE +L + + +H L +Q L+Y IF++EQ N
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYRDREAHLRIMLHNLHSLLAKQQLDYAIFIVEQVAN 191
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 69.3 bits (162), Expect = 3e-12
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 498 NLESEELHKQLSVIKPGGYYYPKNCRSRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNL 677
NL+ E+H + PGG + P +C++R K+A+++PYR+R+T+L + + P L RQ L
Sbjct: 131 NLQEGEVHAIHPELGPGGSWKPDDCQARDKIAVIIPYRERQTHLTRLIDFLIPILQRQRL 190
Query: 678 EYRIFVIEQAGN 713
++R V EQ GN
Sbjct: 191 DFRFIVTEQYGN 202
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 69.3 bits (162), Expect = 3e-12
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 498 NLESEELHKQLSVIKPGGYYYPKNCRSRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNL 677
NL+ E+H + PGG + P +C++R K+A+++PYR+R+T+L + + P L RQ L
Sbjct: 131 NLQEGEVHAIHPELGPGGSWKPDDCQARDKIAVIIPYRERQTHLTRLIDFLIPILQRQRL 190
Query: 678 EYRIFVIEQAGN 713
++R V EQ GN
Sbjct: 191 DFRFIVTEQYGN 202
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 576 SRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQ 704
S HK+ ++VPYRDR L F + FL QN+ + I +I Q
Sbjct: 49 SYHKLCVIVPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQ 91
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 576 SRHKVAILVPYRDRETNLAVFVFKIHPFLMRQNLEYRIFVIEQ 704
S HK+ ++VPYRDR L F + FL QN+ + I +I Q
Sbjct: 49 SYHKLCVIVPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQ 91
>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
protein ZC53.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 624 NLAVFVFKIHPFLMRQNLEYRIFVIEQA 707
N++VF + IH +L QN EY + ++A
Sbjct: 681 NMSVFNYSIHQYLASQNDEYETLLTQEA 708
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 435 QEQTNGHLPFCFHKIHSNHSANLESEELHKQLSVIKPGGYYYPKNCRSR---HKVAILVP 605
Q+ NG C +++ + + +E L + L + GY+ PK CR+ K+ L+
Sbjct: 91 QKDENGD---CKLGLYAGDTCSRSAESLSQSLRFLDSVGYHEPKECRTETPGAKLLGLIA 147
Query: 606 YRDRETNLAVFVF 644
+D E+++++ F
Sbjct: 148 PKDYESSMSLGKF 160
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 435 QEQTNGHLPFCFHKIHSNHSANLESEELHKQLSVIKPGGYYYPKNCRSR---HKVAILVP 605
Q+ NG C +++ + + +E L + L + GY+ PK CR+ K+ L+
Sbjct: 91 QKDENGD---CKLGLYAGDTCSRSAESLSQSLRFLDSVGYHEPKECRTETPGAKLLGLIA 147
Query: 606 YRDRETNLAVFVF 644
+D E+++++ F
Sbjct: 148 PKDYESSMSLGKF 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,578
Number of Sequences: 27780
Number of extensions: 320330
Number of successful extensions: 914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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