Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d21
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          26   0.31 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 342 QDIMLSTTVKDILSRDENIFVQTKKAQELRKQEQTNGHLPFCFHKIHSNHS 494
           +DI+    V D    DEN+ +  KK+     Q    G L    +K+ + HS
Sbjct: 410 KDILHEHNVDDNEDHDENMIIPPKKSDMSNMQSDDGGPLSL-KNKVETTHS 459


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 36  PVRKILKCLGIYKKRDRTPISLHSXIDSVPQRNEYTN 146
           PV+    C G+    D T +S  S   S   +N+Y N
Sbjct: 81  PVQDADFCCGMRWPGDATGLSNRSSTSSNDPKNQYKN 117


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 510 EELHKQLSVIKPGGYYYP 563
           E + +QLS I P  Y YP
Sbjct: 512 EPVDQQLSGISPRNYMYP 529


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 398 ICTNKKSTGIKKTRTNKWTFAILLSQNSLESQREFR-IRGTSQ 523
           +C  ++    ++T   +++ +    QNS +++RE+R  R TS+
Sbjct: 22  LCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 398 ICTNKKSTGIKKTRTNKWTFAILLSQNSLESQREFR-IRGTSQ 523
           +C  ++    ++T   +++ +    QNS +++RE+R  R TS+
Sbjct: 22  LCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 398 ICTNKKSTGIKKTRTNKWTFAILLSQNSLESQREFR-IRGTSQ 523
           +C  ++    ++T   +++ +    QNS +++RE+R  R TS+
Sbjct: 22  LCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 398 ICTNKKSTGIKKTRTNKWTFAILLSQNSLESQREFR-IRGTSQ 523
           +C  ++    ++T   +++ +    QNS +++RE+R  R TS+
Sbjct: 22  LCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 NTAKFVSLSLYGTRIATLCLERQFFG 560
           N +KF+  ++Y T I  L     +FG
Sbjct: 703 NESKFIGFTMYTTCIIWLAFVPIYFG 728


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 NTAKFVSLSLYGTRIATLCLERQFFG 560
           N +KF+  ++Y T I  L     +FG
Sbjct: 793 NESKFIGFTMYTTCIIWLAFVPIYFG 818


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 510 EELHKQLSVIKPGGYYYP 563
           E+ H+  + IK G Y YP
Sbjct: 115 EDQHRLYAQIKTGSYDYP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,776
Number of Sequences: 438
Number of extensions: 4417
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)