Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d19
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.61 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 341 KQKVTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFP 517
           KQKV P G  I    ++    A  T   RN  G + +G       V P ++     K P
Sbjct: 536 KQKVFPNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLP 594


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 134 NKMGLVNSKDFLKKKVDEATSNS 202
           NK+ L  SK F+K       SNS
Sbjct: 554 NKISLATSKSFIKANSQTEVSNS 576


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 466 WCVWSFFSFPRYVPSRFCAECGKFLF 389
           W +   F + RYVP      CG   F
Sbjct: 182 WTIAPMFGWNRYVPEGNMTACGTDYF 207


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 149 PDPFYFAIGNF--YRSLNQFFVSCIKLSVILY 60
           PD   F   +F  Y SL+ F++ CI + V LY
Sbjct: 333 PDQCLFYNTDFIIYSSLSSFYIPCI-IMVFLY 363


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 466 WCVWSFFSFPRYVPSRFCAECGKFLF 389
           W +   F + RYVP      CG   F
Sbjct: 58  WTIAPMFGWNRYVPEGNMTACGTDYF 83


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 TPKGVTIHYPQKKKKF 400
           T +G+T+HY  K++ F
Sbjct: 125 TRQGLTLHYRSKRRGF 140


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 341 KQKVTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEK 451
           +QKV P G  +    +KK  +   T S RN  G + +
Sbjct: 564 RQKVLPDGTLVITSVQKKGDAGVYTCSARNKQGHSAR 600


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 341 KQKVTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEK 451
           +QKV P G  +    +KK  +   T S RN  G + +
Sbjct: 564 RQKVLPDGTLVITSVQKKGDAGVYTCSARNKQGHSAR 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,090
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)