Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d18
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    42   1e-05
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   1.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   3.2  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    22   9.6  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    22   9.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    22   9.6  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    22   9.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 41.5 bits (93), Expect = 1e-05
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +2

Query: 2   EAESNMNDLVSEYQQYQDA 58
           EAESNMNDLVSEYQQYQ+A
Sbjct: 410 EAESNMNDLVSEYQQYQEA 428


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 127 KH*TGQHSLFLYLF-IKFPFIISRGVLILLVL 35
           K  TGQ+SLF Y+F +   +  +  ++I  VL
Sbjct: 158 KQKTGQYSLFAYIFSLVISWFFTHSIIISAVL 189


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 201 LNTHFIKSLNKLTNITPNTKHQQVTNTEQDNI 106
           LN H I    ++ NI PN    +VT    D +
Sbjct: 414 LNRHGIPVQERIVNIGPNKPENRVTKEMLDTL 445


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  T*TIWFRSTSSIKTPRLMMKGNLMK 89
           T T+ F   SSI+ P+L  +G+ +K
Sbjct: 197 TDTMLFNHFSSIQKPKLKAEGSTLK 221


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 186 IKSLNKLTNITPNTKHQQVTNTEQ 115
           + + NK+  +   T+H+ VT+TE+
Sbjct: 497 VNNQNKMNYLKALTEHKLVTSTEE 520


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 97   LYLFIKFPFIISRGVLILLVLRNQIV 20
            LY+ I F  I +RG L L   +N ++
Sbjct: 1075 LYVAIPFRTIFNRGTLALDAFQNWVI 1100


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 73  FIISRGVLILLVLRNQIVHVRF 8
           F+IS   ++ +  RNQI HV++
Sbjct: 343 FVISPNDIVYVRERNQIDHVKY 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,414
Number of Sequences: 5004
Number of extensions: 7712
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)