Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d18
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 47 2e-06
03_01_0034 + 318432-318825,318902-319851 47 2e-06
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 47 2e-06
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 47 2e-06
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 46 6e-06
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 46 6e-06
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 46 6e-06
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 46 6e-06
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 26 3.6
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 26 4.8
12_01_0839 + 7833111-7833380,7833925-7834161 25 6.3
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 25 8.4
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLVSEYQQYQDATA
Sbjct: 590 EAESNMNDLVSEYQQYQDATA 610
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLVSEYQQYQDATA
Sbjct: 410 EAESNMNDLVSEYQQYQDATA 430
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLVSEYQQYQDATA
Sbjct: 431 EAESNMNDLVSEYQQYQDATA 451
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLVSEYQQYQDATA
Sbjct: 410 EAESNMNDLVSEYQQYQDATA 430
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLV+EYQQYQDATA
Sbjct: 410 EAESNMNDLVAEYQQYQDATA 430
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLV+EYQQYQDATA
Sbjct: 410 EAESNMNDLVAEYQQYQDATA 430
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLV+EYQQYQDATA
Sbjct: 426 EAESNMNDLVAEYQQYQDATA 446
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 2 EAESNMNDLVSEYQQYQDATA 64
EAESNMNDLV+EYQQYQDATA
Sbjct: 410 EAESNMNDLVAEYQQYQDATA 430
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 183 KSLNKLTNITPNTKHQQVTNTE 118
+S+N+L NI PN ++ +NT+
Sbjct: 1098 QSMNQLLNINPNVRNMMESNTQ 1119
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 183 KSLNKLTNITPNTKHQQVTNTE 118
+S+N+L N PNT++ +NT+
Sbjct: 421 QSMNQLLNFNPNTRNLMESNTQ 442
>12_01_0839 + 7833111-7833380,7833925-7834161
Length = 168
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 128 VTCWCLVLGVMFVNLFKLLIKW 193
V CWC +LGV+ + L + W
Sbjct: 142 VQCWCGILGVVSIGLASMDRLW 163
>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 50 DTAGTPKPNRSCSIQP 3
D AG PKP RS ++QP
Sbjct: 1047 DKAGDPKPLRSDNVQP 1062
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,898,450
Number of Sequences: 37544
Number of extensions: 42351
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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