Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d18
         (209 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    21   4.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    21   6.9  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    20   9.1  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/42 (21%), Positives = 17/42 (40%)
 Frame = +2

Query: 29  VSEYQQYQDATAXXXXXXXXXXXXXXMLSCSVFVTCWCLVLG 154
           ++  ++++D  A              +  C +F TC C V G
Sbjct: 14  IASCKRHRDPNAIQRVAREGLAKGISIKKCDIFQTCECCVEG 55


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 2   EAESNMNDLVSEYQQ 46
           + E+N+N +VSE Q+
Sbjct: 706 QTEANINSIVSEMQK 720


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
          protein.
          Length = 151

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 47 TAGTPKPNRS 18
          TAG PKPN S
Sbjct: 68 TAGPPKPNIS 77


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,557
Number of Sequences: 2352
Number of extensions: 1906
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 47
effective length of database: 453,435
effective search space used:  9975570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)