Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d16
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 29 0.51
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.68
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.90
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 2.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 3.6
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.6
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 4.8
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 26 6.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 6.3
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 8.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.4
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 8.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.4
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.51
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 462
P +R+ +++ +E LS E+TE+YF+ +S+ W+ P V +R+EL + +E
Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171
Query: 463 QQR 471
+++
Sbjct: 172 KKK 174
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -2
Query: 640 DSTEMVSVLPIFQRLSPAQRQRCF---STCSILASLFVLLLCN 521
D E+V V + LSP+ R + + + CS LA L+ LL+CN
Sbjct: 537 DLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCN 579
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 442 IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 591
+D+ E Q + FSA V YHL D QK++L R S +DV +
Sbjct: 894 VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 151 KILKKVDSEGSNQKIPPRL-RRNMERVEMLAR-PTARRLRSLWDEKCAILPPERRDKIKS 324
K K VD+E N K PP L ++E ++ A P AR L ++ ++ A+L +R +
Sbjct: 9 KYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVL--KRINDTVG 66
Query: 325 ALEEDYFLSP 354
E D L+P
Sbjct: 67 IKESDTGLAP 76
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 370 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELQQRQKWLVNFSAQVAYH 513
Y L E+ +R W + L +D++KEL R+ WL +FS + H
Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 424 VNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYI 528
VN+ I K+K L+ R K L++ + V +HL +I
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 52 KQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILK--KVDSEGSNQKIPPRLRRNMER 225
+++ P ++L+ E L+ K EL T ++ K K N+++ L++ +E+
Sbjct: 1347 ERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVE-NLKKEVEQ 1405
Query: 226 VEMLARPTARRLRSLWDEKC 285
A RL + W+EKC
Sbjct: 1406 ----ANTKNTRLAAAWNEKC 1421
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 67 KTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMER 225
K G L+N + SS+ E ATD E ++ + E ++P +RR +R
Sbjct: 40 KDGIPLDNDNDENDSSE-ESATDEEAERQVREGFIVEDEEDEVPQEIRRKKKR 91
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 622 KPSRSNPGRLARFMVAISDRIAVWIENAV 708
KP+RS RL V D +WI N V
Sbjct: 167 KPARSKHCRLCNICVEKFDHHCIWINNCV 195
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 52 KQIMPKTGKKLEN-KPEPLKSSKPELATDSEQNVKILKKVDSEGSNQ-KIPPRLRRNME 222
K+ + G+KL+ E LK KPE D + K + + SE +NQ K R+ +++E
Sbjct: 43 KEANEEFGEKLQEITKECLKGKKPENTEDGATSNKAFEGLRSEIANQGKQHIRIAKDLE 101
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 82 LENKPEPLKSSKPELATDSEQNVKILK 162
++NK PL+SS EL+T ++ + + K
Sbjct: 1 MKNKDYPLRSSMDELSTKNDNEIDLEK 27
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 64 PKTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPP 201
PK L P P + P +T++ Q + V++ GS IPP
Sbjct: 229 PKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP 274
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 8.4
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +1
Query: 118 PELATDSE-QNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAIL 294
P L + E N ++ ++ G + P L+ E A ARR + L + +L
Sbjct: 280 PSLGKNGEGSNESVIMRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRLGE----LL 335
Query: 295 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWS 408
+ + + L D SPE+ + AL SK WS
Sbjct: 336 TGKHCSECGTPLYSDP--SPEELGIWLHALKYESKDWS 371
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 119 RNWQQIPNRM*KF*KRWILKEVTRKY 196
R W IP+ F K WI++++ KY
Sbjct: 37 RTWIWIPDSKESFVKAWIVEDLGEKY 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,584
Number of Sequences: 5004
Number of extensions: 62599
Number of successful extensions: 246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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