Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d11
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   178   4e-46
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   101   5e-23
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    94   8e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    89   4e-19
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.58 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   2.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   2.3  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   4.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.1  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   9.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.4  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   9.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  178 bits (433), Expect = 4e-46
 Identities = 75/102 (73%), Positives = 89/102 (87%)
 Frame = +2

Query: 143 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 322
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 323 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA 448
           PRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WA
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWA 102


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  101 bits (242), Expect = 5e-23
 Identities = 41/103 (39%), Positives = 71/103 (68%), Gaps = 2/103 (1%)
 Frame = +2

Query: 146 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 325
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 326 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWA 448
           RA+++DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWA 105


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 94.3 bits (224), Expect = 8e-21
 Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = +2

Query: 143 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER--INVYYNEASGGK 316
           MREI+ I  GQ G QIG   WE+   EHGI   G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 317 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA 448
           YVPR++ VDLEP  +D VR+GP+  +F P+  + G+  A NN+A
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYA 104


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
 Frame = +2

Query: 143 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER------INVYYNEA 304
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++             +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 305 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA 448
             GK+VPR++ VDLEP  +D VR+GP+  +F P+  V G+  A NN+A
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYA 108


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 435 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 340
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 211 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 107
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 377 GPFGQIFRPDNFVFGQSGAG-NNWA 448
           GP+G +F P  F+F  +G    NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 108 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 266
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 108 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 266
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 168 AWMWTISLMIALKIWNPPNRI 106
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 122 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 265
           F + S I      I    C  +    +W+V+    G+  TGA S  SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 183 FPH*PAWMWTISLMIALKIWNPPNR 109
           FP     MWTI L++ L +W+  ++
Sbjct: 25  FPLVSFLMWTIGLIVLLGLWSTQDK 49


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 226 VLVRDYFPELCSDLIPALTRLDVDDFPHDCT 134
           +   +Y P   S+ +  + RLDVD F H  T
Sbjct: 625 IAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 SGDSDLQLERINVYYNEASGGKYVPRAVM 337
           +  S L +E I+ Y   A   KY+PR+ +
Sbjct: 632 AASSFLDIENIDEYLESAENMKYLPRSTV 660


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 428 QTVRRRSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPL 306
           Q VRRR+ P+GR     R+ +      +      A   CPL
Sbjct: 148 QVVRRRNVPIGRMPVMLRSNKCV-LSGKNEMEMAALNECPL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,603
Number of Sequences: 5004
Number of extensions: 40973
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)