Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d07
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 554 YNVKNDYKQSNQNHH*SKNCQEL 486
           YN  N+Y  +N N++ + NC++L
Sbjct: 333 YN-NNNYNNNNYNNNYNNNCKKL 354


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 TMGKKDTICYNVDVIQVLLIAFAFVTLLIV 359
           T GK+D       ++ VLL+ F F+ L+ +
Sbjct: 9   TDGKEDQPENTFSLLSVLLVGFLFLILIFL 38


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 545 KNDYKQSNQNHH 510
           KN YK  N NH+
Sbjct: 112 KNQYKNQNNNHY 123


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 542 NDYKQSNQNHH*SKNCQEL 486
           N+YK +  N++ + NC++L
Sbjct: 94  NNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 542 NDYKQSNQNHH*SKNCQEL 486
           N+YK +  N++ + NC++L
Sbjct: 94  NNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 542 NDYKQSNQNHH*SKNCQEL 486
           N+YK +  N++ + NC++L
Sbjct: 94  NNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 542 NDYKQSNQNHH*SKNCQEL 486
           N+YK +  N++ + NC++L
Sbjct: 94  NNYKYNYNNNNYNNNCKKL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,022
Number of Sequences: 438
Number of extensions: 3137
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)