Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d04
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   4.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   6.9  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   6.9  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   6.9  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   6.9  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   6.9  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   9.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   9.1  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 294 RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV--DLLRASATQSKQRQEYGNHEPDASV 124
           RK +NV     LG SDT QS+   S      V  + LRAS TQS         E DASV
Sbjct: 285 RKLFNVFL---LGDSDTIQSVAQASLTQAVTVVYERLRASHTQSNSTSAL--PEEDASV 338


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 105 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 200
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/80 (22%), Positives = 40/80 (50%)
 Frame = -1

Query: 420 ASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTT 241
           A++  S++Q S  + A+P     + + + +A R ++  Q       NV+++  +  +   
Sbjct: 2   ATRSVSMKQTS-QRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVR 60

Query: 240 QSLGARSRRSTSNVDLLRAS 181
             + A++  S+SNV  L +S
Sbjct: 61  GGVAAKATDSSSNVTSLASS 80


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 462 PARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNT 337
           P RRS  N    L    +  LR+FS+ + A  A  + S  N+
Sbjct: 140 PRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNS 181


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 420 ASKRSSLRQFSVPKRATPAGR 358
           +S  S  R+  +P+RATPA R
Sbjct: 541 SSNSSGTRRLGLPQRATPASR 561


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 255 HSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGAL 76
           HS+ + S G+R R S S+ D   + +   +  +   +  P     +   S  G+ + GA+
Sbjct: 94  HSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGAI 153

Query: 75  NI 70
           ++
Sbjct: 154 DV 155


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 51  SLTMSF*CSERRKHGHHVLNNGSC 122
           SLT    CS  RK+GH V+    C
Sbjct: 17  SLTFPMQCSALRKNGHVVIKGRPC 40


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 462 PARRSPINKKQLLAASKRSSLRQFSVPKRATPA 364
           PA   P N K+ +  +  S  ++ + PK+ATPA
Sbjct: 52  PAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 51  SLTMSF*CSERRKHGHHVLNNGSC 122
           SLT    CS  RK+GH V+    C
Sbjct: 17  SLTFPMQCSALRKNGHVVIKGRPC 40


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -1

Query: 378 RATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV 199
           ++TP  R++S+RNT +   R +           ++ ++EL   D       ++R+ +  V
Sbjct: 162 QSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITEL--QDMLDKARDQARKKSRTV 219

Query: 198 DLLRASATQ 172
           D+L     +
Sbjct: 220 DILEGKVNE 228


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 348  HWTSALQAWPF*ELKIAEVMSAWKPLVAAFYL-LVICVLEVIGCGSKRIT 494
            +W S L    +  L    +++ WK L  AF+L L + ++ ++  G K +T
Sbjct: 2158 YWLSTLYGRSWKYLWGGSLLAPWKMLTIAFFLFLSMWIIMLMFLGRKSLT 2207


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 189 EEGLHCLSISCSVHQVIGWYQNGQVHSQLVHYTVYVNLSVYIRRVLLQEEYSV 347
           E G H   +  SV + +GWY +   +      T   NL++    +LL++E+ V
Sbjct: 167 ESGSHWSLLVVSVEKGLGWYYDSMSNGN----TNDCNLAIKNLGILLKKEFRV 215


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 240 QSLGARSRRSTSNVDLLRA---SATQSKQRQEYGNHEPDASVDKT 115
           +S   R RR  S + ++     S T  + +  + NHE D S+D T
Sbjct: 49  KSTSDRKRRRHSRMSIVNVWNQSPTSYRDQLLHFNHESDVSIDDT 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,434
Number of Sequences: 5004
Number of extensions: 40645
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)