Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d04
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390... 28 4.0
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 5.3
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 5.3
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 7.0
01_06_0617 - 30643177-30643506 27 7.0
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688... 27 7.0
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 27 9.2
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 27 9.2
>09_04_0723 +
19736958-19737107,19737979-19738480,19738911-19739061,
19739659-19739766,19739789-19739818,19739894-19740303,
19740797-19740882,19740989-19741058,19741413-19741585,
19741644-19741725,19742131-19742288
Length = 639
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 390 SVPKRATPA-GRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRR 214
S+PK T G+SSS ++ EY + ++ + + LG SD S +R++R
Sbjct: 323 SMPKEETRRNGKSSSHSEIDENSKEQEYNIKGSTQKKIKRDIKVLGSSDKNYSCTSRNKR 382
Query: 213 STSNVDLLRAS 181
S SNV+ R S
Sbjct: 383 S-SNVNSKRKS 392
>01_07_0238 + 42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = -1
Query: 462 PARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARN--TLLATRRAEYKQRD*RK 289
P+R P KK+ R++ +R+ P+GR+ N + R + K
Sbjct: 996 PSRSLPAGKKEFFVKGARNARSPGVKSQRSKPSGRNGDRTNFKSKSEPRPGNGQNTKGDK 1055
Query: 288 QYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLRASAT 175
+ G D TQ+ G ++ +S R +AT
Sbjct: 1056 PQGFNKRNRTGKFDKTQNRGGKASDRSSRFKKPRTAAT 1093
>01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = -1
Query: 366 AGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLR 187
A SSS +TL ++ ++ + ++ Q+ + T S+G +RS SNV++
Sbjct: 872 ASSSSSEASTLYGRKK---NKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDT 928
Query: 186 ASATQSKQRQEYGNHEPDAS 127
+ T Q + + +PD S
Sbjct: 929 NNYTMENQSRN-NDGDPDKS 947
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 432 QLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRA 316
Q+LA SS + + T GRSSSA +T+ +TR A
Sbjct: 468 QILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLA 506
>01_06_0617 - 30643177-30643506
Length = 109
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 465 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLAT 325
LPARR +K+ + +R+ + P+R A SSS + AT
Sbjct: 47 LPARRCRCRRKEAEVGEAAADVRKAATPRRRWGAPSSSSPHVAVAAT 93
>01_06_0365 +
28767538-28767696,28768299-28768520,28768630-28768868,
28769499-28770024,28770115-28770388,28770495-28771134,
28771220-28771448,28771682-28771948,28772031-28772294,
28772700-28773344
Length = 1154
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 192 EGLHCLSISCSVHQVIGWYQNGQVHSQLVHYTVYVNLSVYIRRVL 326
E + CLS VHQ + W+ + S + +Y++ ++ IRR++
Sbjct: 662 ERVRCLSFQSIVHQEVSWFDDPSHSSGSLGAKLYID-ALNIRRLV 705
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 81 RRKHGHHVLNNGSCPPMRPARGYRTPVAVWIE*RLHEEGLHCLSISCSVHQV 236
RR HG H + S +R + V + RL +G+H LS+SC VHQ+
Sbjct: 238 RRIHGIHGTVDISLALIRDGKEGTIQVRIL---RLINDGIH-LSLSCLVHQI 285
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 249 DTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRV 88
D Q G+ R + N+ L ASA ++++ +E +V +TH S +G V
Sbjct: 864 DVVQKSGSLEREA--NITLESASANENEEAEEANAFVEGINVMETHVSTYGTSV 915
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,216
Number of Sequences: 37544
Number of extensions: 295011
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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