Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d04
(525 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein. 31 3.3
BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 3.3
BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 3.3
AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 3.3
AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 3.3
AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 3.3
BC067773-1|AAH67773.1| 434|Homo sapiens arginine/serine-rich co... 30 4.3
AL590077-2|CAI40419.1| 361|Homo sapiens novel protein protein. 30 4.3
BC049204-1|AAH49204.1| 251|Homo sapiens homeobox B4 protein. 29 10.0
BC008354-1|AAH08354.1| 180|Homo sapiens Similar to bromodomain-... 29 10.0
AL137449-1|CAB70742.1| 246|Homo sapiens hypothetical protein pr... 29 10.0
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 29 10.0
AF307160-1|AAG45052.1| 251|Homo sapiens HOXB4 protein. 29 10.0
AF287967-4|AAG31554.1| 251|Homo sapiens homeobox B4 protein. 29 10.0
>D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein.
Length = 2044
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 129 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 180
>BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 175
>BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 175
>AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 175
>AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 175
>AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQ 304
RSP +L+A + SLRQ ++ KR A P + A ++T +A KQ
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQ 175
>BC067773-1|AAH67773.1| 434|Homo sapiens arginine/serine-rich
coiled-coil 2 protein.
Length = 434
Score = 30.3 bits (65), Expect = 4.3
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 399 RQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARS 220
R+FS TP+ R RNT + + A ++ + K+ Q E+ Q + A +
Sbjct: 211 RRFSRSLSRTPSPRPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAA 270
Query: 219 RR--STSNVDLLRASATQ 172
S NV L AS TQ
Sbjct: 271 ATGGSVLNVAALLASGTQ 288
>AL590077-2|CAI40419.1| 361|Homo sapiens novel protein protein.
Length = 361
Score = 30.3 bits (65), Expect = 4.3
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = -1
Query: 384 PKRATPAGRSSSARNTLLATRRAEYKQRD-*RKQYN--VQAVSELGHSDTTQSLGARSRR 214
PKR+ GR++ N+ LA YK++ K Y V +SE TQ+L S+
Sbjct: 245 PKRSVSLGRAALLSNSELAETCQPYKKKHLVAKTYRPLVNDISE-AKEKNTQNLHVSSKV 303
Query: 213 STSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRV 88
+S+ R+ + YG+H D+ K + D+V
Sbjct: 304 KSSS----RSFRKLDSRNNAYGDHVNDSDTMKYYSEVDSDKV 341
>BC049204-1|AAH49204.1| 251|Homo sapiens homeobox B4 protein.
Length = 251
Score = 29.1 bits (62), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 FGLSSACTKKVYIACRSPAP 225
FG +ACT + Y ACR P P
Sbjct: 54 FGRRAACTVQRYAACRDPGP 73
>BC008354-1|AAH08354.1| 180|Homo sapiens Similar to
bromodomain-containing 4 protein.
Length = 180
Score = 29.1 bits (62), Expect = 10.0
Identities = 20/100 (20%), Positives = 41/100 (41%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQ 274
++P+ K+ L S TP+ + S+ ++ RRA ++ + K Q
Sbjct: 3 KTPVAPKKDLKIKNMGSWASLVQKHPTTPSSTAKSSSDSFEQFRRAAREKEEREKALKAQ 62
Query: 273 AVSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQE 154
A + + RSR ++ R + ++++RQE
Sbjct: 63 AEHAEKEKERLRQERMRSREDEDALEQARRAHEEARRRQE 102
>AL137449-1|CAB70742.1| 246|Homo sapiens hypothetical protein
protein.
Length = 246
Score = 29.1 bits (62), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 FGLSSACTKKVYIACRSPAP 225
FG +ACT + Y ACR P P
Sbjct: 49 FGRRAACTVQRYAACRDPGP 68
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 29.1 bits (62), Expect = 10.0
Identities = 20/100 (20%), Positives = 41/100 (41%)
Frame = -1
Query: 453 RSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQ 274
++P+ K+ L S TP+ + S+ ++ RRA ++ + K Q
Sbjct: 1185 KTPVAPKKDLKIKNMGSWASLVQKHPTTPSSTAKSSSDSFEQFRRAAREKEEREKALKAQ 1244
Query: 273 AVSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQE 154
A + + RSR ++ R + ++++RQE
Sbjct: 1245 AEHAEKEKERLRQERMRSREDEDALEQARRAHEEARRRQE 1284
>AF307160-1|AAG45052.1| 251|Homo sapiens HOXB4 protein.
Length = 251
Score = 29.1 bits (62), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 FGLSSACTKKVYIACRSPAP 225
FG +ACT + Y ACR P P
Sbjct: 54 FGRRAACTVQRYAACRDPGP 73
>AF287967-4|AAG31554.1| 251|Homo sapiens homeobox B4 protein.
Length = 251
Score = 29.1 bits (62), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 166 FGLSSACTKKVYIACRSPAP 225
FG +ACT + Y ACR P P
Sbjct: 54 FGRRAACTVQRYAACRDPGP 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,152,202
Number of Sequences: 237096
Number of extensions: 1583406
Number of successful extensions: 6819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6819
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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